1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtcttgcgtttctggacgtagaagaagactctaaacattcgcgattgtttctttcagGAGATGACCCTTGAAGAGGCAGAGACGCTTGCTCTATCGACGCTGAAGCAAGTTATGGAAGAGAAG
species | Selaginella moellendorffii |
transcript | EFJ29212 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTCGGGCTCGGAGGGTGCGGACACATCCTTGCAAGAAAGCTACAACAAA GAGATGACCCTTGAGGAGGCAGAGACGCTTGCTCTATCGACGCTGAAGCAAEST: gi|169103941|gb|FE508399.1|FE508399
genomic: GCTCGGGCTCGGAGGGTGCGGACACATCCTTGCAAGAGAGCTACAACAAAgtaagtcttg ... tttctttcagGAGATGACCCTTGAAGAGGCAGAGACGCTTGCTCTATCGACGCTGAAGCAA
EST: GCTCGGGCTCGGAGGGTGCGGACACATCCTTGCAAGAAAGCTACAACAAA GAGATGACCCTTGAGGAGGCAGAGACGCTTGCTCTATCGACGCTGAAGCAAEST: gi|70669150|gb|DN837727.1|DN837727
genomic: GCTCGGGCTCGGAGGGTGCGGACACATCCTTGCAAGAGAGCTACAACAAAgtaagtcttg ... tttctttcagGAGATGACCCTTGAAGAGGCAGAGACGCTTGCTCTATCGACGCTGAAGCAA
EST: GGAGGGTGCGGACACATCCTTGCAAGAGAGCTACAACAAA GAGATGACCCTTGAAGAGGCAGAGACGCTTGCTCTATCGACGCTGAAGCAA
genomic: GGAGGGTGCGGACACATCCTTGCAAGAGAGCTACAACAAAgtaagtcttg ... tttctttcagGAGATGACCCTTGAAGAGGCAGAGACGCTTGCTCTATCGACGCTGAAGCAA
cttgcgtttctggacgtagaagaagactctaaacattcgcgattgtttctttcagGAGATGACCCTTGAAGAGGCAGAGACGCTTGCTCTATCGACGCTGAAGCAAGTTATGGAAGAGAAG
ctctaaa putative branch site (score: 15)
ttgtttctttc putative PPT
taaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcttgcgtttctggacgtagaagaagactctaaacattcgcgattgtttctttcagGAGATGACCCTTGAAGAGGCAGAGACGCTTGCTCTATCGACGCTGAAGCAAGTTATGGAAGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA