1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgcggtctctttttgcatgtcgagtttctaagtttgatgtttttgttttttgtttttcagTTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCGATTGAGCGGTTGAGAGACACCGAGAGCCAGCTCGAGTGGTCTCGTTCAG
species | Selaginella moellendorffii |
transcript | EFJ25012 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAG TTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCGEST: gi|169057175|gb|FE464686.1|FE464686
genomic: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAGgtgcggtctc ... tgtttttcagTTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCG
EST: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAG TTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCGEST: gi|169031688|gb|FE437489.1|FE437489
genomic: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAGgtgcggtctc ... tgtttttcagTTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCG
EST: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAG TTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCGEST: gi|169083139|gb|FE496435.1|FE496435
genomic: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAGgtgcggtctc ... tgtttttcagTTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCG
EST: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAG TTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCGEST: gi|169034063|gb|FE442797.1|FE442797
genomic: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAGgtgcggtctc ... tgtttttcagTTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCG
EST: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAG TTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCGEST: gi|169055867|gb|FE465094.1|FE465094
genomic: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAGgtgcggtctc ... tgtttttcagTTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCG
EST: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAG TTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCGEST: gi|169029627|gb|FE438962.1|FE438962
genomic: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAGgtgcggtctc ... tgtttttcagTTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCG
EST: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAG TTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGANGCGEST: gi|169078498|gb|FE490635.1|FE490635
genomic: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAGgtgcggtctc ... tgtttttcagTTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCG
EST: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAG TTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCG
genomic: CGCTTTCGCAGCGTCTCTCAGAAGCTGAGGCTGGACAGTTGCGGGTTAAGgtgcggtctc ... tgtttttcagTTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCG
tctctttttgcatgtcgagtttctaagtttgatgtttttgttttttgtttttcagTTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCGATTGAGCGGTTGAGAGACACCGAGAGCCAGCTCGAGTGGTCTCGTTCAG
gtttgat putative branch site (score: 7)
tgtttttgttttttgt CT-rich tract
atgtttttgttttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggtctctttttgcatgtcgagtttctaagtttgatgtttttgttttttgtttttcagTTAGAGCTGAAGGGAGAGATAGAGCGTTTGTCGAGGGATAAAAATGAGGCGATTGAGCGGTTGAGAGACACCGAGAGCCAGCTCGAGTGGTCTCGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC