1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttgtttttataactttctttcagtttcccaggcttatcttcatacttctcattggtgccacacagGTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGACGTGAGCTCGAAGGAGTTTTACGGGGAGGGATATGATGACAGCGACAAGC
species | Selaginella moellendorffii |
transcript | EFJ18978 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAATGAAGTCACAGTTAGAGAACTTGCTCTGATGATGACCGAGG----T GT--ACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGACEST: gi|169065028|gb|FE475100.1|FE475100
genomic: ACAATGAAGTCACAGTTAGAGAACTTGCTCTGATGATGACCGAGGCAAGTgttgttttta ... tgccacacagGTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGAC
EST: ACAATGAAGTCACAGTTAGAGAACTTGCTCTGATGATGACC---G--AG- GTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGACEST: gi|169100875|gb|FE503258.1|FE503258
genomic: ACAATGAAGTCACAGTTAGAGAACTTGCTCTGATGATGACCGAGGCAAGTgttgttttta ... tgccacacagGTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGAC
EST: ACAATGAAGTCACAGTTAGAGAACTTGCTCTGATGATGACC---G--AG- GTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGACEST: gi|169114360|gb|FE516272.1|FE516272
genomic: ACAATGAAGTCACAGTTAGAGAACTTGCTCTGATGATGACCGAGGCAAGTgttgttttta ... tgccacacagGTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGAC
EST: ACAATGAAGTCACAGTTAGAGAACTTGCTTTGATGATGACC---G--AG- GTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGACEST: gi|169114359|gb|FE516271.1|FE516271
genomic: ACAATGAAGTCACAGTTAGAGAACTTGCTCTGATGATGACCGAGGCAAGTgttgttttta ... tgccacacagGTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGAC
EST: ACAATGAAGTCACAGTTAGAGAACTTGCTTTGATGATGACC---G--AG- GTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGAC
genomic: ACAATGAAGTCACAGTTAGAGAACTTGCTCTGATGATGACCGAGGCAAGTgttgttttta ... tgccacacagGTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGAC
aactttctttcagtttcccaggcttatcttcatacttctcattggtgccacacagGTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGACGTGAGCTCGAAGGAGTTTTACGGGGAGGGATATGATGACAGCGACAAGC
ttataac putative branch site (score: 26)
ttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtttttataactttctttcagtttcccaggcttatcttcatacttctcattggtgccacacagGTGTACACAAAAGTTAGCGGCAGGCCGCAGCTGGACGAGCCCACAATCGACGTGAGCTCGAAGGAGTTTTACGGGGAGGGATATGATGACAGCGACAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG