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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttttctttctcctcttttcatactcataatgtaattccatgctgcagGCGGTGATATCCATTGCTGATGAAGATGGAAACTATCTACAGGAAGCCTGGGAACACGTCCTGACGTGTGTTTCTCGCTTTGAGCATCTCCATCTTATTG

Basic information

species Selaginella moellendorffii
transcript EFJ24773
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ24773 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GLYMA01G34560.1 (Glycine max), 3'ss of exon 7
---------------------------------------------gtattttttctttctcctcttttcatactcataatgtaattc--catgctgc-agGCGGTGATATCCATTGCTGATGAAGATGGAAACTATCTACAGGAAGCCTGGGAACACGTCCTGACGTGTGTTTCTCGCTTTGAGCATCTCCATCTTATTG
                                               | ||||| ||  |    || |   ||| |   ||| ||      |  | | ||||  |  |    ||||||||||| |||||||| ||  |||| ||||| ||||||||  || |||| |||||||| || ||||||||||| |||||| |||
tttttaagttttgggtagtgtattcttggtacctgaactttgtgttcagtttttgttgattacattatatgactgaacgtgtcatctgttttattactagGCAATAGTTGTTATTGCTGATGAGGATGGAAATTACTTACAAGAAGCTTGGGAACATATCTTGACTTGTGTTTCCCGGTTTGAGCATCTACATCTTCTTG

upper sequence: EFJ24773 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GLYMA18G45340.1 (Glycine max), 3'ss of exon 6
---------------------------------------------gtattttttctttctcctcttttcatactcataatgtaattc--catgctgc-agGCGGTGATATCCATTGCTGATGAAGATGGAAACTATCTACAGGAAGCCTGGGAACACGTCCTGACGTGTGTTTCTCGCTTTGAGCATCTCCATCTTATTG
                                               | ||||| ||  |    || |   ||| |  |||| ||      |  | | ||||  |  |    ||||||||||| |||||||| ||  |||| ||||| ||||||||  || |||| |||||||| || ||||||||||| |||||| |||
tttttaagttttgggtagtgtattcttggtacctgaactttgtgttcagtttttgttgattacattatatgactgaacatgtcatctgttttattactagGCAATAGTTGTTATTGCTGATGAGGATGGAAATTACTTACAAGAAGCTTGGGAACATATCTTGACTTGTGTTTCCCGGTTTGAGCATCTACATCTTCTTG

upper sequence: EFJ24773 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GLYMA03G02610.1 (Glycine max), 3'ss of exon 6
----------------------------------------------gtattttttctttctcctcttttcatactcataatgtaat-tccatgctgc-agGCGGTGATATCCATTGCTGATGAAGATGGAAACTATCTACAGGAAGCCTGGGAACACGTCCTGACGTGTGTTTCTCGCTTTGAGCATCTCCATCTTATTG
                                                | ||||| ||  |  | || |   ||| |   ||| || |   |  | | ||||  |  |    ||||||||||| |||||||| ||  |||| ||||| |||||||   || |||| |||||||| || ||||||||||| |||||| |||
tattttaagtattgggtaatgtgttcctggtacctgaactcaatattcagtttttgttgattatattatatgactgaacgtgtcatctgtttattactagGCAATAGTTGTTATTGCTGATGAGGATGGAAATTACTTACAAGAAGCTTGGGAACGTATCTTGACTTGTGTTTCCCGGTTTGAGCATCTACATCTTCTTG

upper sequence: EFJ24773 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: AT1G01960.1 (Arabidopsis thaliana), 3'ss of exon 6
-------------------------------------------------gtattttttctttctcctcttttcatactcataatgtaattccatgctgcagGCGGTGATATCCATTGCTGATGAAGATGGAAACTATCTACAGGAAGCCTGGGAACACGTCCTGACGTGTGTTTCTCGCTTTGAGCATCTCCATCTTATTG
                                                   ||      | ||| || | |  | | |  |  | |   | ||      ||||  |  ||    | || || ||||| |||||||||||||| || || ||||| ||  | ||||| |||||||| || ||||||||||| |||||  | |
ttgggttagctgacattcaaacctgattaatcttgaaaataccaatggatgataagaaatgtcttctatgtataaattgtttttttctgttcac-tgatagGCAATAGTAAAACTGGCGGAGGAAGAAGGAAACTATCTACAAGATGCTTGGGAGCATATACTGACTTGTGTTTCACGGTTTGAGCATCTTCATCTCTTGG

upper sequence: EFJ24773 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: Vv15s0048g00800.t01 (Vitis vinifera), 3'ss of exon 6
----------------------------------------gtattttttctttctcctcttttcatactcataatgta--attccatgctg------cagGCGGTGATATCCATTGCTGATGAAGATGGAAACTATCTACAGGAAGCCTGGGAACACGTCCTGACGTGTGTTTCTCGCTTTGAGCATCTCCATCTTATTG
                                          ||||  | ||    ||    |  |  |  | || |   |||| |   ||      |||||  |  |  | ||||| ||||||||||| |||||  ||||||| |||||||||||  |  |||| ||||| ||||| ||||||||| | |||||  | |
tatggtgtgagcgataaattcttgaattttaagcaaatgaccatttgcttttaaatctgaagttgtgattgtgatttggcattctactttgtttgtacagGCAATAGTTACTATTGCAGATGAAGATGGGAACTACTTACAGGAGGCCTGGGAACATATTTTGACATGTGTGTCTCGGTTTGAGCATTTGCATCTCTTGG

upper sequence: EFJ24773 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: PP1S11_55V6.1 (Physcomitrella patens), 3'ss of exon 7
----------------------------------------------------------------------------------------------------gtattttttctttctc-ctcttttcatactc-----ataatgtaattccatgctgcagGCGGTGATATCCATTGCTGATGAAGATGGAAACTATCTACAGGAAGCCTGGGAACACGTCCTGACGTGTGTTTCTCGCTTTGAGCATCTCCATCTTATTG
                                                                                                     || ||  |  ||| | |   | |||  |||     |   | || ||  |||  ||||||  | || |||||||| || || |||||||||||  ||||||| |||||||| ||| |  |||| || ||||| |||||||| ||||| ||||||||||
gtattaagcgcttttataatcctgaataaattttgttgaaatgtttactttgccgagcaacctccaaatgtacttgtcaggaacctccgctgctttgtatatacttggttgttcgcacagatatcaagctcttctaacggtctatttggatg--gcagGCAATCATTTCCATTGCAGACGAGGATGGAAACTACTTACAGGATGCCTGGGAGCACATTTTGACATGCGTTTCGCGCTTTGAACATCTTCATCTTATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattttttctttctcctcttttcatactcataatgtaattccatgctgcagGCGGTGATATCCATTGCTGATGAAGATGGAAACTATCTACAGGAAGCCTGGGAACACGTCCTGACGTGTGTTTCTCGCTTTGAGCATCTCCATCTTATTG
          attttttcttt  TA-rich tract