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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctctatgatgttggaataaatccagatgtagtctaatcacttggaaccatgacagGAAAATCCACAACGAGCAAATGGTTACGTGTTCAACGTCGGCAACCCAGACAATGAAGTCACAGTTAGAGAACTTGCTCTGATGATGACCGAGGCAAGT

Basic information

species Selaginella moellendorffii
transcript EFJ18978
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169100876|gb|FE503259.1|FE503259
EST:     GGACGTTCGTCTACATCAAGGATGCCATTGACGCGGTGATGCGTATGGTG                         GAAAATCCACAACGAGCAAATGGTTACGTGTTCAACGTCGGCAACCCAGAC
genomic: GGACGTTCGTCTACATCAAGGATGCCATTGACGCGGTGATGCGTATGGTGgtaagcctct ... accatgacagGAAAATCCACAACGAGCAAATGGTTACGTGTTCAACGTCGGCAACCCAGAC
EST: gi|169065028|gb|FE475100.1|FE475100
EST:     GGACGTTCGTCTACATCAAGGATGCCATTGACGCGGTGATGCGTATGGTG                         GAAAATCCACAACGAGCAAATGGTTACGTGTTCAACGTCGGCAACCCAGAC
genomic: GGACGTTCGTCTACATCAAGGATGCCATTGACGCGGTGATGCGTATGGTGgtaagcctct ... accatgacagGAAAATCCACAACGAGCAAATGGTTACGTGTTCAACGTCGGCAACCCAGAC
EST: gi|169100875|gb|FE503258.1|FE503258
EST:     GGACGTTCGTCTACATCAAGGATGCCATTGACGCGGTGATGCGTATGGTG                         GAAAATCCACAACGAGCAAATGGTTACGTGTTCAACGTCGGCAACCCAGAC
genomic: GGACGTTCGTCTACATCAAGGATGCCATTGACGCGGTGATGCGTATGGTGgtaagcctct ... accatgacagGAAAATCCACAACGAGCAAATGGTTACGTGTTCAACGTCGGCAACCCAGAC
EST: gi|169114360|gb|FE516272.1|FE516272
EST:     GGACGTTCGTCTACATCAAGGATGCCATTGACGCGGTGATGCGTATGGTG                         GAAAATCCACAACGAGCAAATGGTTACGTGTTCAACGTCGGCAACCCAGAC
genomic: GGACGTTCGTCTACATCAAGGATGCCATTGACGCGGTGATGCGTATGGTGgtaagcctct ... accatgacagGAAAATCCACAACGAGCAAATGGTTACGTGTTCAACGTCGGCAACCCAGAC
EST: gi|169114359|gb|FE516271.1|FE516271
EST:     GGACGTTCGTCTACATCAAGGATGCCATTGACGCGGTGATGCGTATGGTG                         GAAAATCCACAACGAGCAAATGGTTACGTGTTCAACGTCGGCAACCCAGAC
genomic: GGACGTTCGTCTACATCAAGGATGCCATTGACGCGGTGATGCGTATGGTGgtaagcctct ... accatgacagGAAAATCCACAACGAGCAAATGGTTACGTGTTCAACGTCGGCAACCCAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctatgatgttggaataaatccagatgtagtctaatcacttggaaccatgacagGAAAATCCACAACGAGCAAATGGTTACGTGTTCAACGTCGGCAACCCAGACAATGAAGTCACAGTTAGAGAACTTGCTCTGATGATGACCGAGGCAAGT
                              gtctaat  putative branch site (score: 3)
              aataaat  TA-rich tract