1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gcaagctaagcgcttctattcttcgttctttttttcacgttttggtcttgacacaacagGATCACGAGTGGAGACAAGCAGTTACTGCTGCAGGCTCTGGCTGCATGGCCGCATTGGCTGCTGAGCGCTATCTAGTCCGGAATAACCTTCTTATCGAAT
species | Selaginella moellendorffii |
transcript | EFJ06429 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGGCGAGACGTCAGTGGAGGGAGTGTTTGCGGCTGGTGACTTGCAG GATCACGAGTGGAGACAAGCAGTTACTGCTGCAGGCTCTGGCTGCATGGCCEST: gi|169021677|gb|FE428894.1|FE428894
genomic: GTGGAGGCGAGACGTCAGTGGAGGGAGTGTTTGCGGCTGGTGACTTGCAGgcaagctaag ... gacacaacagGATCACGAGTGGAGACAAGCAGTTACTGCTGCAGGCTCTGGCTGCATGGCC
EST: GTGGAGGCGAGACGTCAGTCGAGGGAGTGTTTGCGGCTGGTGACTTACAG GATCACGAGTGGAGACAAGCAGTTACTGCTGCAGGCTCTGGCTGCATGGCCEST: gi|169031595|gb|FE439060.1|FE439060
genomic: GTGGAGGCGAGACGTCAGTGGAGGGAGTGTTTGCGGCTGGTGACTTGCAGgcaagctaag ... gacacaacagGATCACGAGTGGAGACAAGCAGTTACTGCTGCAGGCTCTGGCTGCATGGCC
EST: GTGGAGGCGAGACGTCAGTGGAGGGAGTGTTTGCGGCTGGTGACTTGCAG GATCACGAGTGGAGACAAGCAGTTACTGCTGCAGGCTCTGGCTGCATGGCCEST: gi|169050818|gb|FE459964.1|FE459964
genomic: GTGGAGGCGAGACGTCAGTGGAGGGAGTGTTTGCGGCTGGTGACTTGCAGgcaagctaag ... gacacaacagGATCACGAGTGGAGACAAGCAGTTACTGCTGCAGGCTCTGGCTGCATGGCC
EST: GTGGAGGCGAGACGTCAGTGGAGGGAGTGTTTGCGGCTGGTGACTTGCAG GATCACGAGTGGAGACAAGCAGTTACTGCTGCAGGCTCTGGCTGCATGGCC
genomic: GTGGAGGCGAGACGTCAGTGGAGGGAGTGTTTGCGGCTGGTGACTTGCAGgcaagctaag ... gacacaacagGATCACGAGTGGAGACAAGCAGTTACTGCTGCAGGCTCTGGCTGCATGGCC
gctaagcgcttctattcttcgttctttttttcacgttttggtcttgacacaacagGATCACGAGTGGAGACAAGCAGTTACTGCTGCAGGCTCTGGCTGCATGGCCGCATTGGCTGCTGAGCGCTATCTAGTCCGGAATAACCTTCTTATCGAAT
tcttgac putative branch site (score: 22)
ttcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagctaagcgcttctattcttcgttctttttttcacgttttggtcttgacacaacagGATCACGAGTGGAGACAAGCAGTTACTGCTGCAGGCTCTGGCTGCATGGCCGCATTGGCTGCTGAGCGCTATCTAGTCCGGAATAACCTTCTTATCGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT