1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttattcgaattatgtgctttcaaggtttgaaaatgcctgagattgctagtccggaaaagtgttactgctgtacgctaactgtttgtccttggtttttcagAAGGAAGTCTCAGAATTTGCTTGTACCTGCGAGCGGCATGTTGGTACGCAATCTGGTGGCATGGACCAG
species | Selaginella moellendorffii |
transcript | EFJ17214 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTCCTCTGCACTTTCTATCATGGCAGCACTTGATCTTTCGTTTACCAAG AAGGAAGTCTCAGAATTTGCTTGTACCTGCGAGCGGCATGTTGGTACGCAAEST: gi|169114902|gb|FE515851.1|FE515851
genomic: GCTCCTCTGCACTTTCTATCATGGCAGCACTTGATCTTTCGTTTACCAAGgttgccacaa ... ggtttttcagAAGGAAGTCTCAGAATTTGCTTGTACCTGCGAGCGGCATGTTGGTACGCAA
EST: GCTCCTCTGCACTTTCTATCATGGCAGCACTTGATCTTTCGTTTACCAAG AAGGAAGTCTCAGAATTTGCTTGTACCTGCGAGCGGCATGTTGGTACGCAAEST: gi|169071790|gb|FE476647.1|FE476647
genomic: GCTCCTCTGCACTTTCTATCATGGCAGCACTTGATCTTTCGTTTACCAAGgttgccacaa ... ggtttttcagAAGGAAGTCTCAGAATTTGCTTGTACCTGCGAGCGGCATGTTGGTACGCAA
EST: GCTCCTCTGCACTTTCTATCATGGCAGCACTTGATCTTTCGTTTACCAAG AAGGAAGTCTCAGAATTTGCTTGTACCTGCGAGCGGCATGTTGGTACGCAAEST: gi|169019356|gb|FE427666.1|FE427666
genomic: GCTCCTCTGCACTTTCTATCATGGCAGCACTTGATCTTTCGTTTACCAAGgttgccacaa ... ggtttttcagAAGGAAGTCTCAGAATTTGCTTGTACCTGCGAGCGGCATGTTGGTACGCAA
EST: GCTCCTCTGCACTTTCTATCATGGCAGCACTTGATCTTTCGTTTACCAAG AAGGAAGTCTCAGAATTTGCTTGTACCTGCGAGCGGCATGTTGGTACGCAA
genomic: GCTCCTCTGCACTTTCTATCATGGCAGCACTTGATCTTTCGTTTACCAAGgttgccacaa ... ggtttttcagAAGGAAGTCTCAGAATTTGCTTGTACCTGCGAGCGGCATGTTGGTACGCAA
ctagtccggaaaagtgttactgctgtacgctaactgtttgtccttggtttttcagAAGGAAGTCTCAGAATTTGCTTGTACCTGCGAGCGGCATGTTGGTACGCAATCTGGTGGCATGGACCAG
cgctaac putative branch site (score: 2)
tttttc putative PPT
tttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattcgaattatgtgctttcaaggtttgaaaatgcctgagattgctagtccggaaaagtgttactgctgtacgctaactgtttgtccttggtttttcagAAGGAAGTCTCAGAATTTGCTTGTACCTGCGAGCGGCATGTTGGTACGCAATCTGGTGGCATGGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA