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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggagtggcctagaagtgagcatggcttgttcattcggtttcttagCAGGACAAGTACATGCAAAATCGATTGGTGAGACTGGTGTGCGTCTTTTTGACGAGCCTCATTCGCAATAGAATCATAAACG

Basic information

species Selaginella moellendorffii
transcript EFJ16277
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ16277 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: PP1S166_16V6.2 (Physcomitrella patens), 3'ss of exon 10
----------------------------------------gtaggagtggcctagaagtgagcatggcttgttcattcggtttcttag-
                                               | |  |  |  | | |||    |    |||  |||   ||     |||||||||||||||||||| ||  ||||  |||||||||| |||||||||   ||| | ||||| || |  || || || |
gttcggttttctaactcgtgctttgtgggtgggttgattcaatattcttgtgtcaatctcatcattaactaacaattacgttgtgtattgttcagGACAAGTACATGCAAAACCGTCTGGTTCGACTGGTGTGTGTCTTTTTGCAAAGCTTGATTCGAAACAAGATAATCAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169067175|gb|FE474943.1|FE474943
EST:     ATATCCATGCCTACATTAACAATTGCATATCTTCATGCGAGAATATGAAG                         --G-ACAAGTACATGCAAAATCGATTGGTGAGACTGGTGTGCGTCTTTTTG
genomic: ATATCCATGCCTACATTAACAATTGCATATCTTCATGCGAGAATATGAAGgtaggagtgg ... ggtttcttagCAGGACAAGTACATGCAAAATCGATTGGTGAGACTGGTGTGCGTCTTTTTG
EST: gi|169115049|gb|FE516414.1|FE516414
EST:     ATATCCATGCCTACATTAACAATTGCATATCTTCATGCGAGAATATGAAG                         --G-ACAAGTACATGCAAAATCGATTGGTGAGACTGGTGTGCGTCTTTTTG
genomic: ATATCCATGCCTACATTAACAATTGCATATCTTCATGCGAGAATATGAAGgtaggagtgg ... ggtttcttagCAGGACAAGTACATGCAAAATCGATTGGTGAGACTGGTGTGCGTCTTTTTG
EST: gi|169104235|gb|FE504520.1|FE504520
EST:     ATATCCATGCCTACATTAACAATTGCATATCTTCATGCGAGAATATGAAG                         --G-ACAAGTACATGCAAAATCGATTGGTGAGACTGGTGTGCGTCTTTTTG
genomic: ATATCCATGCCTACATTAACAATTGCATATCTTCATGCGAGAATATGAAGgtaggagtgg ... ggtttcttagCAGGACAAGTACATGCAAAATCGATTGGTGAGACTGGTGTGCGTCTTTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaggagtggcctagaagtgagcatggcttgttcattcggtttcttagCAGGACAAGTACATGCAAAATCGATTGGTGAGACTGGTGTGCGTCTTTTTGACGAGCCTCATTCGCAATAGAATCATAAACG
                                                     tttctt  CT-rich tract
                                               tttctta  TA-rich tract