1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaacgaactttcttgtacgtatgattcgtgaccttcgaacatttcagGTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTGCTTGAAACTCCACAGGACATTCGTAGGATGGCGATCCTCGGGCGCAATT
species | Selaginella moellendorffii |
transcript | EFJ07772 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACTCACAGGGGATGTTCTGGAGGACCTTCGAGTTAGCAAGCAATCACTG GTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTGEST: gi|169036333|gb|FE445217.1|FE445217
genomic: AACTCACAGGGGATGTTCTGGAGGACCTTCGAGTTAGCAAGCAATCACTGgtaaacgaac ... aacatttcagGTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTG
EST: AACTCACAGGGGATGTTCTGGAGGACCTTCGAGTTAGCAAGCAATCACTG GTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTGEST: gi|169034438|gb|FE446396.1|FE446396
genomic: AACTCACAGGGGATGTTCTGGAGGACCTTCGAGTTAGCAAGCAATCACTGgtaaacgaac ... aacatttcagGTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTG
EST: AACTCACAGGGGATGTTCTGGAGGACCTTCGAGTTAGCAAGCAATCACTG GTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTGEST: gi|169116134|gb|FE517913.1|FE517913
genomic: AACTCACAGGGGATGTTCTGGAGGACCTTCGAGTTAGCAAGCAATCACTGgtaaacgaac ... aacatttcagGTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTG
EST: AACTCACAGGGGATGTTCTGGAGGACCTTCGAGTTAGCAAGCAATCACTG GTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTGEST: gi|169048565|gb|FE455773.1|FE455773
genomic: AACTCACAGGGGATGTTCTGGAGGACCTTCGAGTTAGCAAGCAATCACTGgtaaacgaac ... aacatttcagGTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTG
EST: AACTCACAGGGGATGTTCTGGAGGACCTTCGAGTTAGCAAGCAATCACTG GTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTGEST: gi|169034439|gb|FE446397.1|FE446397
genomic: AACTCACAGGGGATGTTCTGGAGGACCTTCGAGTTAGCAAGCAATCACTGgtaaacgaac ... aacatttcagGTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTG
EST: AACTCACAGGGGATGTTCTGGAGGACCTTCGAGTTAGCAAGCAATCACTG GTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTGEST: gi|169036360|gb|FE445218.1|FE445218
genomic: AACTCACAGGGGATGTTCTGGAGGACCTTCGAGTTAGCAAGCAATCACTGgtaaacgaac ... aacatttcagGTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTG
EST: AACTCACAGGGGATGTTCTGGAGGACCTTCGAGTTAGCAAGCAATCACTG GTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTG
genomic: AACTCACAGGGGATGTTCTGGAGGACCTTCGAGTTAGCAAGCAATCACTGgtaaacgaac ... aacatttcagGTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTG
gtaaacgaactttcttgtacgtatgattcgtgaccttcgaacatttcagGTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTGCTTGAAACTCCACAGGACATTCGTAGGATGGCGATCCTCGGGCGCAATT
tatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacgaactttcttgtacgtatgattcgtgaccttcgaacatttcagGTGGAACTCATAGCGAAGTCAGACGCTCTGAGACAAATGCTTCTCGACTTGCTTGAAACTCCACAGGACATTCGTAGGATGGCGATCCTCGGGCGCAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG