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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttcatttgactacattgaacgggatcgtaaactccccggtggcttgcagGCTGATTGAAGGTGTTCTGCGATCAGTAAACAACCTGCTTGAAAAGTTCCATCAGTCTCTTTTCCTATACATCATGGTCTCTCCCAACAAATTCGTGTCC

Basic information

species Selaginella moellendorffii
transcript EFJ06367
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ06367 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: Vv14s0066g00580.t01 (Vitis vinifera), 3'ss of exon 5
-----------------------------------------gtaagctttcatttgactacattgaacgggatcgtaaactccccggtggctt---gcagGCTGATTGAAGGTGTTCTGCGATCAGTAAACAACCTGCTTGAAAAGTTCCATCAGTCTCTTTTCCTATACATCATGGTCTCTCCCAACAAATTCGTGTCC
                                             | | || |||  ||    | |  |   |   |   | |  ||| ||||   ||||| |||||||||| ||  | ||||||||||||||||| ||||| |||||||| |||||  |||| || ||| |  |    ||||||| ||| ||||| || 
tattatttgttaatttgctttacagtgattattattggggttctggatatcctttatcttgtatcattgttgtttaaggtttctgggttgcttgctgcagGTTGATTGAAGGAGTCATACGATCAGTAAACAACCTCCTTGAGAAGTTCCACCAGTCATTTTTTCTTTACCTTTTAACATCTCCCAGCAAGTTCGTTTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagctttcatttgactacattgaacgggatcgtaaactccccggtggcttgcagGCTGATTGAAGGTGTTCTGCGATCAGTAAACAACCTGCTTGAAAAGTTCCATCAGTCTCTTTTCCTATACATCATGGTCTCTCCCAACAAATTCGTGTCC
         atttgac  putative branch site (score: 4)
     tttcattt  TA-rich tract