1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgtatacgtgttctatcttttaccagtagttcttacgcttgtttttctttgacaagTGCCCCGGCTTTTCACTTCCGACATTGCGAGCTTTTACGAGGGTTACTACCTAAGCAAAGGTGTGAAGATAGTTAAAGGAACGGTTGCTTCTGGTTTCGA
species | Selaginella moellendorffii |
transcript | EFJ06061 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGGTTTATCCGGAACCATGGTGCA TGCCCCGGCTTTTCACTTCCGACATTGCGAGCTTTTACGAGGGTTACTACCEST: gi|169055396|gb|FE463766.1|FE463766
genomic: ATGGTTTATCCGGAACCATGGTGCAgtacgtatac ... ctttgacaagTGCCCCGGCTTTTCACTTCCGACATTGCGAGCTTTTACGAGGGTTACTACC
EST: GGAACCATGGTGCA TGCCCCGGCTTTTCACTTCCGACATTGCGAGCTTTTACGAGGGTTACTACCEST: gi|169041822|gb|FE449341.1|FE449341
genomic: GGAACCATGGTGCAgtacgtatac ... ctttgacaagTGCCCCGGCTTTTCACTTCCGACATTGCGAGCTTTTACGAGGGTTACTACC
EST: GACCATGAACAAGCTACAAGTTACTATGGTTTATCCTGAACCATGGTGCA TGCCCCGGCTTTTCACTTCCGACATTGCGAGCTTTTACGAGGGTTACTACCEST: gi|169066650|gb|FE475432.1|FE475432
genomic: GACCATGAACAAGCTACAAGTTACTATGGTTTATCCGGAACCATGGTGCAgtacgtatac ... ctttgacaagTGCCCCGGCTTTTCACTTCCGACATTGCGAGCTTTTACGAGGGTTACTACC
EST: GAACCATGGTGCA TGCCCCGGCTTTTCACTTCCGACATTGCGAGCTTTTACGAGGGTTACTACCEST: gi|169098862|gb|FE502259.1|FE502259
genomic: GAACCATGGTGCAgtacgtatac ... ctttgacaagTGCCCCGGCTTTTCACTTCCGACATTGCGAGCTTTTACGAGGGTTACTACC
EST: GACCATGAACAAGCTACAAGTTACTATGGTTTATCCGGAACCATGGTGCA TGCCCCGGCTTTTCACTTCCGACATTGCGAGCTTTTACGAGGGTTACTACC
genomic: GACCATGAACAAGCTACAAGTTACTATGGTTTATCCGGAACCATGGTGCAgtacgtatac ... ctttgacaagTGCCCCGGCTTTTCACTTCCGACATTGCGAGCTTTTACGAGGGTTACTACC
gtatacgtgttctatcttttaccagtagttcttacgcttgtttttctttgacaagTGCCCCGGCTTTTCACTTCCGACATTGCGAGCTTTTACGAGGGTTACTACCTAAGCAAAGGTGTGAAGATAGTTAAAGGAACGGTTGCTTCTGGTTTCGA
ttcttac putative branch site (score: 43)
ttcttacgcttgtttt CT-rich tract
tatctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtatacgtgttctatcttttaccagtagttcttacgcttgtttttctttgacaagTGCCCCGGCTTTTCACTTCCGACATTGCGAGCTTTTACGAGGGTTACTACCTAAGCAAAGGTGTGAAGATAGTTAAAGGAACGGTTGCTTCTGGTTTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA