1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtgatcgattttcatggttttcgttctctcttacttgtttgtctttatggatccagGATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAGAGAGATTGCCTACTCGAACAAG
species | Selaginella moellendorffii |
transcript | EFJ29444 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACAC GATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAGEST: gi|169112679|gb|FE509452.1|FE509452
genomic: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACACgtaagtgatc ... atggatccagGATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAG
EST: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACAC GATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAGEST: gi|169035552|gb|FE442943.1|FE442943
genomic: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACACgtaagtgatc ... atggatccagGATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAG
EST: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACAC GATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAGEST: gi|169099232|gb|FE501550.1|FE501550
genomic: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACACgtaagtgatc ... atggatccagGATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAG
EST: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACAC GATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAGEST: gi|169035551|gb|FE442942.1|FE442942
genomic: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACACgtaagtgatc ... atggatccagGATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAG
EST: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACAC GATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAGEST: gi|169112680|gb|FE509453.1|FE509453
genomic: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACACgtaagtgatc ... atggatccagGATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAG
EST: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACAC GATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAGEST: gi|169036817|gb|FE444960.1|FE444960
genomic: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACACgtaagtgatc ... atggatccagGATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAG
EST: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACAC GATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAGEST: gi|169036818|gb|FE444961.1|FE444961
genomic: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACACgtaagtgatc ... atggatccagGATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAG
EST: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACAC GATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAG
genomic: GACACGCAAGTAATCTCCGATTACGTTCGTTACCTCCTCCACCAGCACACgtaagtgatc ... atggatccagGATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAG
tgatcgattttcatggttttcgttctctcttacttgtttgtctttatggatccagGATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAGAGAGATTGCCTACTCGAACAAG
ctcttac putative branch site (score: 12)
tctttat putative PPT
attttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgatcgattttcatggttttcgttctctcttacttgtttgtctttatggatccagGATTGTTTTGGGTGAACAAGCAACTGTCAAGGCAGCTGCGAAGCTGGTTAGAGAGATTGCCTACTCGAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG