1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatgcagattttctgctgtagcgctggtgttgatcctcgaatgctgaattatagGCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAACACTCGTAAGCACTTGATATCTACCTCAGAGAAGCAGTTGCTTGAGCGCC
species | Selaginella moellendorffii |
transcript | EFJ26297 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTGGAG GCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAACEST: gi|169094798|gb|FE492949.1|FE492949
genomic: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTGGAGgtatgcagat ... tgaattatagGCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAAC
EST: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTAGAG GCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGACGCCAACEST: gi|169078486|gb|FE488361.1|FE488361
genomic: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTGGAGgtatgcagat ... tgaattatagGCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAAC
EST: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTGGAG GCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAACEST: gi|169052739|gb|FE461156.1|FE461156
genomic: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTGGAGgtatgcagat ... tgaattatagGCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAAC
EST: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTGGAG GCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAACEST: gi|169078956|gb|FE487635.1|FE487635
genomic: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTGGAGgtatgcagat ... tgaattatagGCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAAC
EST: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTGGAG GCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAACEST: gi|169077257|gb|FE485143.1|FE485143
genomic: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTGGAGgtatgcagat ... tgaattatagGCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAAC
EST: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTAGAG GCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGACGCCAACEST: gi|169053212|gb|FE462487.1|FE462487
genomic: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTGGAGgtatgcagat ... tgaattatagGCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAAC
EST: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTAGAG GCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGACGCCAACEST: gi|169083878|gb|FE492790.1|FE492790
genomic: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTGGAGgtatgcagat ... tgaattatagGCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAAC
EST: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTGGAG GCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAAC
genomic: CACGATACATGCAACAGACTGATGTGCCTGACTACCTTAGGCACGTGGAGgtatgcagat ... tgaattatagGCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAAC
gtatgcagattttctgctgtagcgctggtgttgatcctcgaatgctgaattatagGCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAACACTCGTAAGCACTTGATATCTACCTCAGAGAAGCAGTTGCTTGAGCGCC
tgttgat putative branch site (score: 19)
tgaattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcagattttctgctgtagcgctggtgttgatcctcgaatgctgaattatagGCCAGGTTGCACGAAGAGAACGAGAGATGCTTGCTTTATCTGGATGCCAACACTCGTAAGCACTTGATATCTACCTCAGAGAAGCAGTTGCTTGAGCGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC