1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagttttcctctctttttcgtctctcgtggtgtactttctcatctggatcataccagGTGTGGAACATATCCTCCAGTTGTGAAGACCGCGGTTCCCGTGGACGGGAGATTCGAGCGCATAGTTCTGTCCAGCAGCGCTACATCAGATCACTCCATC
species | Selaginella moellendorffii |
transcript | EFJ23796 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTACACTCCCGGAAGAATCTATCACATAGTGGAGCGCAAAGTTTGCAG GTGTGGAACATATCCTCCAGTTGTGAAGACCGCGGTTCCCGTGGACGGGAGEST: gi|169026244|gb|FE432607.1|FE432607
genomic: CTCTACACTCCCGGAAGAATCTATCACATAGTGGAGCGCAAAGTTTGCAGgtagttttcc ... atcataccagGTGTGGAACATATCCTCCAGTTGTGAAGACCGCGGTTCCCGTGGACGGGAG
EST: CTCTACACTCCCGGAAGAATCTATCACATAGTGGAGCGCAAAGTTTGCAG GTGTGGAACATATCCTCCAGTTGTGAAGACCGCGGTTCCCGTGGACGGGAGEST: gi|169043819|gb|FE453810.1|FE453810
genomic: CTCTACACTCCCGGAAGAATCTATCACATAGTGGAGCGCAAAGTTTGCAGgtagttttcc ... atcataccagGTGTGGAACATATCCTCCAGTTGTGAAGACCGCGGTTCCCGTGGACGGGAG
EST: CTCTACACTCCCGGAAGAATCTATCACATAGTGGAGCGCAAAGTTTGCAG GTGTGGAACATATCCTCCAGTTGTGAAGACCGCGGTTCCCGTGGACGGGAGEST: gi|169056382|gb|FE466961.1|FE466961
genomic: CTCTACACTCCCGGAAGAATCTATCACATAGTGGAGCGCAAAGTTTGCAGgtagttttcc ... atcataccagGTGTGGAACATATCCTCCAGTTGTGAAGACCGCGGTTCCCGTGGACGGGAG
EST: CACATAGTGGAGCGCAAAGTTTGCAG GTGTGGAACATATCCTCCAGTTGTGAAGACCGCGGTTCCCGTGGACGGGAG
genomic: CACATAGTGGAGCGCAAAGTTTGCAGgtagttttcc ... atcataccagGTGTGGAACATATCCTCCAGTTGTGAAGACCGCGGTTCCCGTGGACGGGAG
gttttcctctctttttcgtctctcgtggtgtactttctcatctggatcataccagGTGTGGAACATATCCTCCAGTTGTGAAGACCGCGGTTCCCGTGGACGGGAGATTCGAGCGCATAGTTCTGTCCAGCAGCGCTACATCAGATCACTCCATC
tcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttttcctctctttttcgtctctcgtggtgtactttctcatctggatcataccagGTGTGGAACATATCCTCCAGTTGTGAAGACCGCGGTTCCCGTGGACGGGAGATTCGAGCGCATAGTTCTGTCCAGCAGCGCTACATCAGATCACTCCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA