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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggaagtgaattctttggattgatcggtggttctcatggttcgatctctcgggctatggtggcagGGGATGATGAACAACTGCTGGTTCCGGGTGAAGGTCCGTCCCTGCAAGGGGAAGCTCGGGGGCGTGGCGCTGGCGTTCGAGCACCCGACGCGGCCGGCCA

Basic information

species Selaginella moellendorffii
transcript EFJ14822
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ14822 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os08g36480.1 (Oryza sativa), 3'ss of exon 3
-------------------gtgagtggaagtgaattctttggattgatcggtggttctcatggttcgatctctcgggctatggtggcagGGGATGATGAACAACTGCTGGTTCCGGGTGAAGGTCCGTCCCTGCAAGGGGAAGCTCGGGGGCGTGGCGCTGGCGTTCGAGCACCCGACGCGGCCGGCCA
                       |   | | ||   |  || |     || |||      |  |||||||  | ||| | | |   |||||||||||||||||||||||||||  |||||||||       |||  |  | |    || |   | | ||||| ||||||||||||||||| ||| |  |
gtaggtgcttcattccgtctccggccaaggcgacggcgatgtagacgacgatggcaaat-tcattcgatcggttgggtttttg---cagGGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGGCCGCACAAGGGTGAGATCGGGCTGGTGTTCGAGCACCCGACGCAGCCCGGGA

upper sequence: EFJ14822 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os02g53130.1 (Oryza sativa), 3'ss of exon 3
-------------gtgagtggaagtgaattctttggattgatcggtg-----gttctcatggttcgatctctcgggctatggtggcagGGGATGATGAACAACTGCTGGTTCCGGGTGAAGGTCCGTCCCTGCAAGGGGAAGCTCGGGGGCGTGGCGCTGGCGTTCGAGCACCCGACGCGGCCGGCCA
                ||     |  |   | |  | || | ||  |     || || | | || | |   |  |  | ||   |||||| ||||||||||||||||||||| ||||||||       | |||| |  | |    ||||   | | ||||| ||||||||||||||||| ||||| ||
gtaagcactaagcaccagcaacggcaacgccatccgtttcaacgacgacgatgtgcttacgttttggttcgtgtgcgtgtgt--gcagGGCATGATGAACAACTGCTGGTTCAGGGTGAAGACGAAGACGTGCAGGCCGCACAAGGGGGAGATCGGGCTGGTGTTCGAGCACCCGACGCAGCCGGGCA

upper sequence: EFJ14822 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G428027_T01 (Zea mays), 3'ss of exon 3
-------------------------------------------------------gtgagtggaagtgaattctttggattgatcggtggttctcatggttcgatctctcgggctatggtggcagGGGATGATGAACAACTGCTGGTTCCGGGTGAAGGTCCGTCCCTGCAAGGGGAAGCTCGGGGGCGTGGCGCTGGCGTTCGAGCACCCGACGCGGCCGGCCA
                                                       |    | |   |  |    |  | | |||     |  |   ||| | |  |  ||  ||   |   |||||| |||||||||||||||||||||||||||||||||    | |||  |  | |    || |   | |  |||| ||||||||||||||||| ||||| ||
gtgagttaccgcttcatcgtgcttcctttccggtggcttcgccgtcggtccgtccgatgcttgtcttccacggctgtgttagattaaatgcacgtgtggcttgtccgttcctgc-gcgcgcgcagGGCATGATGAACAACTGCTGGTTCCGGGTGAAGGTCAACGCGTGCCGGCCGCACAAGGGCGAGATCGGCCTGGTGTTCGAGCACCCGACGCAGCCGGGCA

upper sequence: EFJ14822 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM5G878558_T01 (Zea mays), 3'ss of exon 3
----------------------------------gtgagtggaagtgaattctttggattgatcgg--tggttctcatg---gttcgatctctcgggctatggtg-gcagGGGATGATGAACAACTGCTGGTTCCGGGTGAAGGTCCGTCCCTGCAAGGGGAAGCTCGGGGGCGTGGCGCTGGCGTTCGAGCACCCGACGCGGCCGGCCA
                                  |  |       ||   || |      ||  |   | | |   ||    |  ||  |    |  |      | |||||| |||||||||||||||||||||||||||||| ||    | |||  |  | |    || |   | |   ||| ||||||||||||| ||| ||||| ||
gtgagttgccgctccatcgtgtttcccttcccgtggaaccatgcatgtcctcctctccacgactgtgttagcttaaatacacgcacgtgcgtctgttcctctacgcgcagGGCATGATGAACAACTGCTGGTTCCGGGTGAAGATCAACGCGTGCCGGCCGCACAAGGGCGAGATCGGCATGGTGTTCGAGCACCCGGCGCAGCCGGGCA

upper sequence: EFJ14822 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GRMZM2G568636_T01 (Zea mays), 3'ss of exon 3
------------gtgagtgga-agtgaattctttggattgatcggtggttctcatggtt-cgatctctcgggct-atggtggca--gGGGATGATGAACAACTGCTGGTTCCGGGTGAAGGTCCGTCCCTGCAAGGGGAAGCTCGGGGGCGTGGCGCTGGCGTTCGAGCACCCGACGCGGCCGGCCA
               ||   | | |        || ||   |   || ||||  |  |   ||| | |    || ||| |||||  |||||||||||||||||||||||||  |||||||||       |||     | |    || |   | | ||||| ||||||||||||||||| ||| | ||
gtacatatatatactagcacataatattaatactgaataagtttctgtttctgctcctgatgatatataaatctgatgatggcacagGGGATGATGAACAACTGCTGGTTCAAGGTGAAGGTGAACGTGTGCCGTCCGCACAAGGGCGAGATCGGGCTGGTGTTCGAGCACCCGACGCAGCCCGGCA

upper sequence: EFJ14822 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: GLYMA14G33480.1 (Glycine max), 3'ss of exon 3
------------------gtgagtggaagtgaattctttggattga-------tcggtggttctcatggttcgatctctcggg----ctatggtg-gcagGGGATGATGAACAACTGCTGGTTCCGGGTGAAGGTCCGTCCCTGCAAGGGGAAGCTCGGGGGCGTGGCGCTGGCGTTCGAGCACCCGACGCGGCCGGCCA
                  ||   |    |    || |    | | |           ||  ||   | ||   || | | |||    | ||  || | |||| ||||||||||||||||||||| |||||||      |     ||||    |    || |   | |   | | ||| || ||||| || |  || || |
atttcaagggaccaaaaagtattttcccgctttttttcacaagtaaagcaattctaatgaatccttttgtgttatgttttgggaatgcaataatgtgtagGGTATGATGAACAACTGCTGGTTCAGGGTGAAAACAAATGTAGCCAAGCCCCACAAGGGTGAGATTGGCATAGTGTTTGAACACCCTACCCAACCAGCAA

upper sequence: EFJ14822 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: PP1S58_249V6.1 (Physcomitrella patens), 3'ss of exon 5
--------------------gtgagtggaagtgaatt---ctttggattgatcggt--ggttc-tcatggttcgatctctcgggctatggtg----gcagGGGATGATGAACAACTGCTGGTTCCGGGTGAAGGTCCGTCCCTGCAAGGGGAAGCTCGGGGGCGTGGCGCTGGCGTTCGAGCACCCGACGCGGCCGGCCA
                    ||         || |||   || || |  | |  ||  ||| | || || |  || | |    ||  |||      |||||| ||||||||||||||||||||||||||||||||| |    | ||||    ||  | | ||| |    ||||| |||||||||||||| ||||||| ||
agaactgctgcgggttccatgtcgtctacgatgtattgcgctgtgcagcgttaagtttggtacgtcctgttctgaccgccgtcgccgtggcatgctgcagGGAATGATGAACAACTGCTGGTTCCGGGTGAAGGTCGGGATATCCAAGTTCGAGGACAGCGGCATCCACCTGGCATTCGAGCACCCGACTCGGCCGGGCA

upper sequence: EFJ14822 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: PP1S79_76V6.2 (Physcomitrella patens), 3'ss of exon 6
--------------------------------gtgagtggaagtgaattctttggattgatcggtggttctcatggttcgatctctcgggctatggtggcagGGGATGATGAACAACTGCTGGTTCCGGGTGAAGGTCCGTCCCTGCAAGGGGAAGCTCGGGGGCGTGGCGCTGGCGTTCGAGCACCCGACGCGGCCGGCCA
                                        ||| | ||||||       ||   | | | |  ||  |        || | | || |  ||||| |||||||||||||||||||||||||||||| || |      ||||    |   |   ||| |    ||| ||||||| |||||||| | ||| |  |
tgtttcgcatgcatccccagttgatcattccacatcccccaagcggattcttcattacaat-aatcgctgttctgaatgtcctcgccgtggtgtgcta-cagGGAATGATGAACAACTGCTGGTTCCGGGTGAAGATCGGCATTACCAAGTCCGAAGACAACGGCATTCATCTGACGTTCGATCACCCGACTCAGCCAGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttggattgatcggtggttctcatggttcgatctctcgggctatggtggcagGGGATGATGAACAACTGCTGGTTCCGGGTGAAGGTCCGTCCCTGCAAGGGGAAGCTCGGGGGCGTGGCGCTGGCGTTCGAGCACCCGACGCGGCCGGCCA
       gattgat  putative branch site (score: 4)