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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttgcgcatgcagtttctagtcaggctgtctataaatgtatttctctgtgaatcctccagTTAGTCCTGATAGGGGCTTGCTTCAAAGCTCGACGGTGGCTGATTTGGTTCCTTGTACTTTCTCTGATGGCGAGATTGAGACTCCTGCCTCCTATATCGA

Basic information

species Selaginella moellendorffii
transcript EFJ06070
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169100793|gb|FE503228.1|FE503228
EST:     CTCCAAAGCAACGGTATAAAACTAAACAAAGATGGAGGAATTCTNCA-GG                         TTAGTCCTGATAGGGGCTTGCTTCAA-GCTCGACGGTGGCTGATTTGGGT
genomic: CTCCAAAGCAACGGTATAAAACTAAACAAAGATGGAGGAATTCT-CAAGGgtacgttgcg ... aatcctccagTTAGTCCTGATAGGGGCTTGCTTCAAAGCTCGACGGTGGCTGATTTGG-T






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgcagtttctagtcaggctgtctataaatgtatttctctgtgaatcctccagTTAGTCCTGATAGGGGCTTGCTTCAAAGCTCGACGGTGGCTGATTTGGTTCCTTGTACTTTCTCTGATGGCGAGATTGAGACTCCTGCCTCCTATATCGA
                                               tcctcc  CT-rich tract
                       tctataaatgtattt  TA-rich tract