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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctcacattttctttcttctttctccaactttgtttcatagagttgtcttgtttctttgcttctaccttttttttttcttttctagGCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAGTTTGGCGGATCGACACTTCATGGCCAG

Basic information

species Selaginella moellendorffii
transcript EFJ34520
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169050756|gb|FE459902.1|FE459902
EST:     TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAG                         GCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
genomic: TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAGgtctcacatt ... tcttttctagGCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
EST: gi|169021050|gb|FE430659.1|FE430659
EST:     TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAG                         GCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
genomic: TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAGgtctcacatt ... tcttttctagGCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
EST: gi|169050757|gb|FE459903.1|FE459903
EST:     TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAG                         GCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
genomic: TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAGgtctcacatt ... tcttttctagGCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
EST: gi|70670137|gb|DN838714.1|DN838714
EST:     TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAG                         GCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
genomic: TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAGgtctcacatt ... tcttttctagGCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
EST: gi|169021049|gb|FE430658.1|FE430658
EST:     TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAG                         GCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG
genomic: TGGATGCCATGTACCGGACGAACACTGTACGCGTGCCAAAGCCTCTAAAGgtctcacatt ... tcttttctagGCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttcatagagttgtcttgtttctttgcttctaccttttttttttcttttctagGCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAGTTTGGCGGATCGACACTTCATGGCCAG
               tcttgtttctttgctt  CT-rich tract
                                    ttttttttttcttttc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctcacattttctttcttctttctccaactttgtttcatagagttgtcttgtttctttgcttctaccttttttttttcttttctagGCAGGGAGTTTGCCCCGAGGAGGCTCTTTCATCATCATGGAATACATCGAGTTTGGCGGATCGACACTTCATGGCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA