1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tccacctttgcattttcctttctttttttgtgtggttttcgttttcggttttgcgatgcgtgtctaaagatcccgctttggttcgtgtccttgtttccagGCCAGGAAGCGCTTGAGCTCCATCGTCAGCCGCATCATCCTGGACCGTAGGCGGCAGCAGAAGCAAGCAGACAATGGCCGCTGCAAGGATTTCCTGTCAA
species | Selaginella moellendorffii |
transcript | EFJ30794 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
cggttttgcgatgcgtgtctaaagatcccgctttggttcgtgtccttgtttccagGCCAGGAAGCGCTTGAGCTCCATCGTCAGCCGCATCATCCTGGACCGTAGGCGGCAGCAGAAGCAAGCAGACAATGGCCGCTGCAAGGATTTCCTGTCAA
gtctaaa putative branch site (score: 6)
tccttgtttcc putative PPT
taaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccacctttgcattttcctttctttttttgtgtggttttcgttttcggttttgcgatgcgtgtctaaagatcccgctttggttcgtgtccttgtttccagGCCAGGAAGCGCTTGAGCTCCATCGTCAGCCGCATCATCCTGGACCGTAGGCGGCAGCAGAAGCAAGCAGACAATGGCCGCTGCAAGGATTTCCTGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - tttgcat
- - - - - - -tttcctt
- - - - - - - - - - - ttttttt
- - - - - - - - - - - - - - - - - -ttttcgt
- - - - - - - - - - - - - - - - - - - - - tttcggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcgtg