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gtatgtgtgatttatttcttaaactcgttgattatctggcgtgtttcttgcagGCTCGCATCGACCCCGGCAATGTTTAACAGCACAGTGACGGAAAGGGGGGATCTCTTATGCCCAGCTGATGGTGCTATCATGATCACAG
species | Selaginella moellendorffii |
transcript | EFJ15375 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAATTGCCCAAGGCATCGTTGATACTGGCTTGGACGTTGTTTTGTACGG GCTCGCATCGACCCCGGCAATGTTTAACAGCACAGTGACGGAAAGGGGGGAEST: gi|169094540|gb|FE494505.1|FE494505
genomic: GCAATTGCCCAAGGCATCGTTGATACTGGCTTGGACGTTGTTTTGTACGGgtatgtgtga ... tttcttgcagGCTCGCATCGACCCCGGCAATGTTTAACAGCACAGTGACGGAAAGGGGGGA
EST: GCAATTGCCCAAGGCATCGTTGATACTGGCTTGGACGTTGTTTTGTACGG GCTCGCATCGACCCCGGCAATGTTTAACAGCACAGTGACGGAAAGGGGGGAEST: gi|169074927|gb|FE482782.1|FE482782
genomic: GCAATTGCCCAAGGCATCGTTGATACTGGCTTGGACGTTGTTTTGTACGGgtatgtgtga ... tttcttgcagGCTCGCATCGACCCCGGCAATGTTTAACAGCACAGTGACGGAAAGGGGGGA
EST: GCAATTGCTCAAGGCATCGGTGATACTGGCTTGGACGTTGTTTTGTACGG GCTGGCATCGACCCCGGCAATGTTTAATAGCACAGTGACGGAAAGGGAGGAEST: gi|169026292|gb|FE432655.1|FE432655
genomic: GCAATTGCCCAAGGCATCGTTGATACTGGCTTGGACGTTGTTTTGTACGGgtatgtgtga ... tttcttgcagGCTCGCATCGACCCCGGCAATGTTTAACAGCACAGTGACGGAAAGGGGGGA
EST: GCAATTGCTCAAGGCATCGGTGATACTGGCTTGGACGTTGTTTTGTACGG GCTGGCATCGACCCCGGCAATGTTTAATAGCACAGTGACGGAAAGGGAGGA
genomic: GCAATTGCCCAAGGCATCGTTGATACTGGCTTGGACGTTGTTTTGTACGGgtatgtgtga ... tttcttgcagGCTCGCATCGACCCCGGCAATGTTTAACAGCACAGTGACGGAAAGGGGGGA
gtatgtgtgatttatttcttaaactcgttgattatctggcgtgtttcttgcagGCTCGCATCGACCCCGGCAATGTTTAACAGCACAGTGACGGAAAGGGGGGATCTCTTATGCCCAGCTGATGGTGCTATCATGATCACAG
cgttgat putative branch site (score: 2)
tgtttctt putative PPT
tgatttatttcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtgatttatttcttaaactcgttgattatctggcgtgtttcttgcagGCTCGCATCGACCCCGGCAATGTTTAACAGCACAGTGACGGAAAGGGGGGATCTCTTATGCCCAGCTGATGGTGCTATCATGATCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT