1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcagtttttgaatcgaattctttttgctcgagcgagcgagatgatcaaaatgacgcggcacagGTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATCCTGCCTGACGCTGCGGTTCGGAGGGCGATGAACGAGATCAACGCAG
species | Selaginella moellendorffii |
transcript | EFJ06464 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAG GTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATCEST: gi|169071401|gb|FE479053.1|FE479053
genomic: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAGgtcagttttt ... cgcggcacagGTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATC
EST: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAG GTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATCEST: gi|169050202|gb|FE459126.1|FE459126
genomic: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAGgtcagttttt ... cgcggcacagGTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATC
EST: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAG GTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATCEST: gi|169049842|gb|FE458558.1|FE458558
genomic: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAGgtcagttttt ... cgcggcacagGTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATC
EST: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAG GTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATCEST: gi|169055728|gb|FE465333.1|FE465333
genomic: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAGgtcagttttt ... cgcggcacagGTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATC
EST: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAG GTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATCEST: gi|169049841|gb|FE458557.1|FE458557
genomic: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAGgtcagttttt ... cgcggcacagGTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATC
EST: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAG GTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATCEST: gi|169029348|gb|FE439450.1|FE439450
genomic: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAGgtcagttttt ... cgcggcacagGTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATC
EST: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAG GTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATCEST: gi|169071400|gb|FE479052.1|FE479052
genomic: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAGgtcagttttt ... cgcggcacagGTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATC
EST: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAG GTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATC
genomic: TTGAGCAGAAGAGTGAGATCGCCAAGTCTGTGTCGGAGGAGCTCGAAAAGgtcagttttt ... cgcggcacagGTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATC
tgaatcgaattctttttgctcgagcgagcgagatgatcaaaatgacgcggcacagGTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATCCTGCCTGACGCTGCGGTTCGGAGGGCGATGAACGAGATCAACGCAG
aattcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtttttgaatcgaattctttttgctcgagcgagcgagatgatcaaaatgacgcggcacagGTGATGAGCGCGTATGGATACAGCATAGAGCAGATACTCATCGTCGACATCCTGCCTGACGCTGCGGTTCGGAGGGCGATGAACGAGATCAACGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA