1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagttatacccatagctctcgctctcggtccgatgatcatcgcatctcttttttctagctttgagcatatataacactgacgttcctcttttgtctttgcagGGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAATGTTCTGCGGCGGCCTTGGCTTATCATCCTGTCGCAAATGAGAGGATCCT
species | Selaginella moellendorffii |
transcript | EFJ06041 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTT GGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAATEST: gi|169070091|gb|FE478016.1|FE478016
genomic: CAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTTgtgagttata ... gtctttgcagGGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAAT
EST: CAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTT GGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAAT
genomic: CAATCCCGTCGCCTTCAGCAGGCAATGTGGATGAAAAACGCCAAACTCTTgtgagttata ... gtctttgcagGGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAAT
cttttttctagctttgagcatatataacactgacgttcctcttttgtctttgcagGGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAATGTTCTGCGGCGGCCTTGGCTTATCATCCTGTCGCAAATGAGAGGATCCT
cactgac putative branch site (score: 4)
cgttcctcttttgtct CT-rich tract
atatataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttatacccatagctctcgctctcggtccgatgatcatcgcatctcttttttctagctttgagcatatataacactgacgttcctcttttgtctttgcagGGCTTGCATGACGTGCCTCATCGTCTTCTTGCTCTACATTGTCATCGCAATGTTCTGCGGCGGCCTTGGCTTATCATCCTGTCGCAAATGAGAGGATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT