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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagaaacaaaaaagaaaactctatataatcgcgcttttccttatcctcctgtagGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA

Basic information

species Selaginella moellendorffii
transcript EFJ36429
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ36429 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G178415_T03 (Zea mays), 3'ss of exon 3
gtaaaagaaacaaaaaagaaaactctatataatcgcgcttttccttatcctcctgtagGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA----------------------------------------------------
            |||||       ||  ||  | |   |  |  ||  |  ||   ||| |||||| || ||||| || ||  | || || |||||||||||||||||||| ||||||||  | ||||| ||||| ||||| || || || || ||||                                                    
-----gttggtgaaaaatctggtcctg-atgtttgaaatcct--ttgacaaccc--aggttgatcctgatgaagttaatgccttggcacaattgatgacttggaaaacagCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTAGCCCTGGAGACCTGAGCATCTCTGAGCTTGAGAGGCTTACCCGAGTTTTTAC

upper sequence: EFJ36429 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 3
-------------------------------------------gtaaaagaaacaaaaaagaaaactctatataat-cgcgcttttccttatcctcctgtagGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA
                                            | |||          | ||| ||     | ||    |   | | ||  |  ||   ||| |||||| || ||||| || ||  | || || |||||||||||||||||||| ||||||||  | ||||| ||||| ||||| || || || || ||||
atccatttccttcaaattaattttcctcttcatttaagactcattgaaatccgttggtgaaaaatctggtcctgatgtttgaaatcctttgacaaccc--agGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA

upper sequence: EFJ36429 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: AT5G07440.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------------------------------gtaaaagaaacaaaaaagaaaactctatataatcgcgcttttccttatcctcctgtagGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA
                                                      |    | | |   ||   |    | |  || |  | | |||   || |     || ||| ||||||||| ||||| ||||||||||| ||| ||||||||||||| || || |||||  || ||||||| || || || || || || || || ||||
gtagggtcttttatcatttgttcttgatctaggatttaaagttgacaactttgggggttatagattgaatctagggatttgaattaagg-gttttgattttttggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTGCTGTAGCAGATATTCCATATGGTGGTGCTAAAGGTGGAATTGGATGTA

upper sequence: EFJ36429 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: AT5G18170.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------------------gtaaaagaaacaaaaaagaaaactc--------tatataat-cgcgcttttccttatcctcctgtagGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA
                                           |  || |||| |  |   ||  ||        ||||| || |   |   |  |  |  || || ||| |||||| || |||||||||||| | || ||| | ||||| ||||||||||| || |||||  |||| |||||||| || || |||||||| || ||| 
gtttttgaccttttgactttgaccttttgaaccaaaactcaaatgtaacaaaccagtatacaatttcggttttggtatatgatgcaaaccggttatcgttttcttgcagGTTGATCCGGATGAAGTGAACGCATTGGCTCAGCTCATGACATGGAAAACAGCAGTGGCTAAGATTCCTTACGGAGGAGCTAAAGGAGGGATTGGTTGTG

upper sequence: EFJ36429 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv08s0007g07400.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------gtaaaagaaacaaaaaagaaaactctat-ataatcgcgcttttccttatc------ctcctgtagGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA
                                    |  |       || |        ||||   | |  |  |||   | |||      ||  |||||| ||| ||||| || || || ||  | || ||  | ||||| ||||| ||||| ||||| ||| |||||||||| || ||||| ||||||||||| ||||
ccagggttttcatgtagctttaaattaaatctactctccagcttgggaacagatttgtgctattgcagtttcagtttggatgatcgcatagcttttgtagGTTGACCCAGATGAGGTAAATGCTTTGGCACAACTAATGACGTGGAAGACAGCAGTAGCAAATATTCCATACGGTGGGGCCAAAGGAGGGATAGGATGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagaaacaaaaaagaaaactctatataatcgcgcttttccttatcctcctgtagGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA
                             tcgcgcttttccttat  CT-rich tract
        aaaaaagaaaactcta  TA-rich tract