1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgtttcctttgcttttcactttgattcattcgttggcttgtctctatacagGCTTCAGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAG
species | Selaginella moellendorffii |
transcript | EFJ31563 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATACCGAGCCCGGACGCTGCCACACTCGATCATCAAAGGCTTCTTGAGAG GCTTCAGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGEST: gi|169036220|gb|FE445689.1|FE445689
genomic: ATACCGAGCCCGGACGCTGCCACACTCGATCATCAAAGGCTTCTTGAGAGgtttgtttcc ... ctctatacagGCTTCAGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTG
EST: ATACCGAGCCCGGACGCTGCCACACTCGATCATCAAAGGCTTCTTGAGAG GCTTCAGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGEST: gi|169061695|gb|FE469885.1|FE469885
genomic: ATACCGAGCCCGGACGCTGCCACACTCGATCATCAAAGGCTTCTTGAGAGgtttgtttcc ... ctctatacagGCTTCAGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTG
EST: ATACCGAGCCCGGACGCTGCCACACTCGATCATCAAAGGCTTCTTGAGAG GCTTCAGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTG
genomic: ATACCGAGCCCGGACGCTGCCACACTCGATCATCAAAGGCTTCTTGAGAGgtttgtttcc ... ctctatacagGCTTCAGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTG
gtttgtttcctttgcttttcactttgattcattcgttggcttgtctctatacagGCTTCAGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAG
ctttgat putative branch site (score: 14)
cttgtctct putative PPT
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttcctttgcttttcactttgattcattcgttggcttgtctctatacagGCTTCAGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA