1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaggatctctaaagttccagcccgattttaatcttgttcttcgcgattgtaccagGATGCTCGTCTACGAATACGTGGACAATGGAAACCTAGAGGACTGGCTCCATGGCTTTTCATCACAGACTCAAGCTTTCCCGTGGGAGGCACGAATGAAG
species | Selaginella moellendorffii |
transcript | EFJ31013 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACAAGAATCTGGTCAGGTTGCTTGGCTACTGCGCCGAGAGCTGCTATAG GATGCTCGTCTACGAATACGTGGACAATGGAAACCTAGAGGACTGGCTCCAEST: gi|169107286|gb|FE508259.1|FE508259
genomic: CACAAGAATCTGGTCAGGTTGCTTGGCTACTGCGCCGAGAGCTGCTATAGgtgaggatct ... attgtaccagGATGCTCGTCTACGAATACGTGGACAATGGAAACCTAGAGGACTGGCTCCA
EST: CACAAGAATCTGGTCAGGTTGCTTGGCTACTGCGCCGAGAGCTGCTATAG GATGCTCGTCTACGAATACGTGGACAATGGAAACCTAGAGGACTGGCTCCA
genomic: CACAAGAATCTGGTCAGGTTGCTTGGCTACTGCGCCGAGAGCTGCTATAGgtgaggatct ... attgtaccagGATGCTCGTCTACGAATACGTGGACAATGGAAACCTAGAGGACTGGCTCCA
gaggatctctaaagttccagcccgattttaatcttgttcttcgcgattgtaccagGATGCTCGTCTACGAATACGTGGACAATGGAAACCTAGAGGACTGGCTCCATGGCTTTTCATCACAGACTCAAGCTTTCCCGTGGGAGGCACGAATGAAG
ttttaat putative branch site (score: 20)
attttaatcttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggatctctaaagttccagcccgattttaatcttgttcttcgcgattgtaccagGATGCTCGTCTACGAATACGTGGACAATGGAAACCTAGAGGACTGGCTCCATGGCTTTTCATCACAGACTCAAGCTTTCCCGTGGGAGGCACGAATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT