1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgatcgatcgatccaaacgtaaagttgacacactcgttttccttgctcttctcgccagGATGAGCAACTACCAGAGCTTGGAAGCGGCAGTCACTGCCGCCGCGGAGTTCCTAAACGCGGCAGTCAAGCCGGTGCTCGTGGCTGGCAACAAGCTCAAA
species | Selaginella moellendorffii |
transcript | EFJ09318 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGCATCCAACTTTCAGCAAAGAACCGGTTCCTTACGCGATCTCTCCCAG GATGAGCAACTACCAGAGCTTGGAAGCGGCAGTCACTGCCGCCGCGGAGTTEST: gi|169029291|gb|FE439744.1|FE439744
genomic: GAGCATCCAACTTTCAGCAAAGAACCGGTTCCTTACGCGATCTCTCCCAGgtgatcgatc ... ttctcgccagGATGAGCAACTACCAGAGCTTGGAAGCGGCAGTCACTGCCGCCGCGGAGTT
EST: GAGCATCCAACTTTCAGCAAAGAACCGGTTCCTTACGCGATCTCTCCCAG GATGAGCAACTACCAGAGCTTGGAAGCGGCAGTCACTGCCGCCGCGGAGTTEST: gi|169072665|gb|FE481305.1|FE481305
genomic: GAGCATCCAACTTTCAGCAAAGAACCGGTTCCTTACGCGATCTCTCCCAGgtgatcgatc ... ttctcgccagGATGAGCAACTACCAGAGCTTGGAAGCGGCAGTCACTGCCGCCGCGGAGTT
EST: GAGCATCCAACTTTCAGCAAAGAACCGGTTCCTTACGCGATCTCTCCCAG GATGAGCAACTACCAGAGCTTGGAAGCGGCAGTCACTGCCGCCGCGGAGTTEST: gi|169077081|gb|FE484460.1|FE484460
genomic: GAGCATCCAACTTTCAGCAAAGAACCGGTTCCTTACGCGATCTCTCCCAGgtgatcgatc ... ttctcgccagGATGAGCAACTACCAGAGCTTGGAAGCGGCAGTCACTGCCGCCGCGGAGTT
EST: GAGCATCCAACTTTCAGCAAAGAACCGGTTCCTTACGCGATCTCTCCCAG GATGAGCAACTACCAGAGCTTGGAAGCGGCAGTCACTGCCGCCGCGGAGTTEST: gi|169077354|gb|FE485656.1|FE485656
genomic: GAGCATCCAACTTTCAGCAAAGAACCGGTTCCTTACGCGATCTCTCCCAGgtgatcgatc ... ttctcgccagGATGAGCAACTACCAGAGCTTGGAAGCGGCAGTCACTGCCGCCGCGGAGTT
EST: GAGCATCCAACTTTCAGCAAAGAACCGGTTCCTTACGCGATCTCTCCCAG GATGAGCAACTACCAGAGCTTGGAAGCGGCAGTCACTGCCGCCGCGGAGTT
genomic: GAGCATCCAACTTTCAGCAAAGAACCGGTTCCTTACGCGATCTCTCCCAGgtgatcgatc ... ttctcgccagGATGAGCAACTACCAGAGCTTGGAAGCGGCAGTCACTGCCGCCGCGGAGTT
tcgatcgatccaaacgtaaagttgacacactcgttttccttgctcttctcgccagGATGAGCAACTACCAGAGCTTGGAAGCGGCAGTCACTGCCGCCGCGGAGTTCCTAAACGCGGCAGTCAAGCCGGTGCTCGTGGCTGGCAACAAGCTCAAA
agttgac putative branch site (score: 30)
ctcgttttccttgctc putative PPT
taaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatcgatcgatccaaacgtaaagttgacacactcgttttccttgctcttctcgccagGATGAGCAACTACCAGAGCTTGGAAGCGGCAGTCACTGCCGCCGCGGAGTTCCTAAACGCGGCAGTCAAGCCGGTGCTCGTGGCTGGCAACAAGCTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA