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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatggaatcattccagaaatcttaccaaagagaaaacaagcagGCCTCTCATTCTCTGGAATTTCTGTCGAGGGATTGTACAAGTTTGCTCGGAT

Basic information

species Selaginella moellendorffii
transcript EFJ06466
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169061524|gb|FE469623.1|FE469623
EST:     GTTTCCTCACGTCTGCTGGACTCGCCGCGGCAGGCTTGGCTCTCCGACAG                         GCCTCTCATTCTCTGGAATTTCTGTCGAGGGATTGTACAAGTTTGCTCGGA
genomic: GTTTCCTCACGTCTGCTGGACTCGCCGCGGCAGGCTTGGCTCTCCGGCAGgtaaatggaa ... aaacaagcagGCCTCTCATTCTCTGGAATTTCTGTCGAGGGATTGTACAAGTTTGCTCGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaatggaatcattccagaaatcttaccaaagagaaaacaagcagGCCTCTCATTCTCTGGAATTTCTGTCGAGGGATTGTACAAGTTTGCTCGGAT
                              atcttac  putative branch site (score: 3)
                                     aaatctta  TA-rich tract