1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagcaagaaatttctagcgagcaaacttttcttgttcctttccttttactttaatgttcttgcttggtttctagGAGGGGCGCATTGCCCAGGAAATCAAAGAGATAGAAGAGCTCACTGGATTCAAGCTCCGAGTTCTTGCTCAAAACTATCCCAACACTCCAG
species | Selaginella moellendorffii |
transcript | EFJ06072 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAGCTACACTCCAGTGATTGACGTCGCTGGATTTCTTTCAGAAGGTCAG GAGGGGCGCATTGCCCAGGAAATCAAAGAGATAGAAGAGCTCACTGGATTCEST: gi|169030982|gb|FE436846.1|FE436846
genomic: GAAGCTACACTCCAGTGATTGACGTCGCTGGATTTCTTTCAGAAGGTCAGgtaagcaaga ... tggtttctagGAGGGGCGCATTGCCCAGGAAATCAAAGAGATAGAAGAGCTCACTGGATTC
EST: GAAGCTACACTCCAGTGATTGACGTCGCTGGATTTCTTTCAGAAGGTCAG GAGGGGCGCATTGCCCAGGAAATCAAAGAGATAGAAGAGCTCACTGGATTCEST: gi|70670856|gb|DN839433.1|DN839433
genomic: GAAGCTACACTCCAGTGATTGACGTCGCTGGATTTCTTTCAGAAGGTCAGgtaagcaaga ... tggtttctagGAGGGGCGCATTGCCCAGGAAATCAAAGAGATAGAAGAGCTCACTGGATTC
EST: GAAGCTACACTCCAGTGATTGACGTCGCTGGATTTCTTTCAGAAGGTCAG GAGGGGCGCATTGCCCAGGAAATCAAAGAGATAGAAGAGCTCACTGGATTCEST: gi|70669614|gb|DN838191.1|DN838191
genomic: GAAGCTACACTCCAGTGATTGACGTCGCTGGATTTCTTTCAGAAGGTCAGgtaagcaaga ... tggtttctagGAGGGGCGCATTGCCCAGGAAATCAAAGAGATAGAAGAGCTCACTGGATTC
EST: GAAGCTACACTCCAGTGATTGACGTCGCTGGATTTCTTTCAGAAGGTCAG GAGGGGCGCATTGCCCAGGAAATCAAAGAGATAGAAGAGCTCACTGGATTC
genomic: GAAGCTACACTCCAGTGATTGACGTCGCTGGATTTCTTTCAGAAGGTCAGgtaagcaaga ... tggtttctagGAGGGGCGCATTGCCCAGGAAATCAAAGAGATAGAAGAGCTCACTGGATTC
agcaaacttttcttgttcctttccttttactttaatgttcttgcttggtttctagGAGGGGCGCATTGCCCAGGAAATCAAAGAGATAGAAGAGCTCACTGGATTCAAGCTCCGAGTTCTTGCTCAAAACTATCCCAACACTCCAG
ctttaat putative branch site (score: 5)
ttcttgctt CT-rich tract
ttttactttaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaagaaatttctagcgagcaaacttttcttgttcctttccttttactttaatgttcttgcttggtttctagGAGGGGCGCATTGCCCAGGAAATCAAAGAGATAGAAGAGCTCACTGGATTCAAGCTCCGAGTTCTTGCTCAAAACTATCCCAACACTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT