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gtaacgtccgtttctcttcctcagtccaggatagtaatgaaacaatatctgtgaaagcagGGCGGTCGCACGGAGGATGCAGCAGAGTGGATCTTCAGTAATTCTGACGATGCCAATGCGATGGAGCTCGATGTAGGAGGTTCGAGCACTCCCTCATCCT
species | Selaginella moellendorffii |
transcript | EFJ20925 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TTGCGTTGGGCTTTTCTGCCGATCTTGCTCGGAAAGCTCTCAGAGCGACG GGCGGTCGCACGGAGGATGCAGCAGAGTGGATCTTCAGTAATTCTGACGATEST: gi|169064576|gb|FE471307.1|FE471307
genomic: TTGCGTTGGGCTTTTCTGCCGATCTTGCTCGGAAAGCTCTCAGAGCGACGgtaacgtccg ... gtgaaagcagGGCGGTCGCACGGAGGATGCAGCAGAGTGGATCTTCAGTAATTCTGACGAT
EST: TTGCGTTGGGCTTTTCTGCCGATCTTGCTCGGAAGGCTCTCAGAGCGACG GGCGGTCGCACGGAGGATGCAGCAGAGTGGATCTTCAGTAATTCTGACGATEST: gi|169043576|gb|FE450798.1|FE450798
genomic: TTGCGTTGGGCTTTTCTGCCGATCTTGCTCGGAAAGCTCTCAGAGCGACGgtaacgtccg ... gtgaaagcagGGCGGTCGCACGGAGGATGCAGCAGAGTGGATCTTCAGTAATTCTGACGAT
EST: TTGCGTTGGGCTTTTCTGCCGATCTTGCTCGGAAAGCTCTCAGAGCGACG GGCGGTCGCACGGAGGATGCAGCAGAGTGGATCTTCAGTAATTCTGACGATEST: gi|169082079|gb|FE486977.1|FE486977
genomic: TTGCGTTGGGCTTTTCTGCCGATCTTGCTCGGAAAGCTCTCAGAGCGACGgtaacgtccg ... gtgaaagcagGGCGGTCGCACGGAGGATGCAGCAGAGTGGATCTTCAGTAATTCTGACGAT
EST: TTGCGTTGGGCTTTTCTGCCGATCTTGCTCGGAAAGCTCTCAGAGCGACG GGCGGTCGCACGGAGGATGCAGCAGAGTGGATCTTCAGTAATTCTGACGATEST: gi|169019836|gb|FE426923.1|FE426923
genomic: TTGCGTTGGGCTTTTCTGCCGATCTTGCTCGGAAAGCTCTCAGAGCGACGgtaacgtccg ... gtgaaagcagGGCGGTCGCACGGAGGATGCAGCAGAGTGGATCTTCAGTAATTCTGACGAT
EST: TTGCGTTGGGCTTTTCTGCCGATCTTGCTCGGAAAGCTCTCAGAGCGACG GGCGGTCGCACGGAGGATGCAGCAGAGTGGATCTTCAGTAATTCTGACGAT
genomic: TTGCGTTGGGCTTTTCTGCCGATCTTGCTCGGAAAGCTCTCAGAGCGACGgtaacgtccg ... gtgaaagcagGGCGGTCGCACGGAGGATGCAGCAGAGTGGATCTTCAGTAATTCTGACGAT
gtccgtttctcttcctcagtccaggatagtaatgaaacaatatctgtgaaagcagGGCGGTCGCACGGAGGATGCAGCAGAGTGGATCTTCAGTAATTCTGACGATGCCAATGCGATGGAGCTCGATGTAGGAGGTTCGAGCACTCCCTCATCCT
taatgaaacaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgtccgtttctcttcctcagtccaggatagtaatgaaacaatatctgtgaaagcagGGCGGTCGCACGGAGGATGCAGCAGAGTGGATCTTCAGTAATTCTGACGATGCCAATGCGATGGAGCTCGATGTAGGAGGTTCGAGCACTCCCTCATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT