1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaaagctttttgtatccttggttgatatcattaagcaaccgatcgtgcagGGCAAACTTCGCCTCGGATCTCACTGAGTCGGATCCAGGAAGCACTGACGCTTTCTGGCATCACAAGGACGCTATCCTGTGCTGTACCTGGAAG
species | Selaginella moellendorffii |
transcript | EFJ29546 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AGGAACGTCGAGGCATTACTCTTGGCCCATCAGATCTTGCGAAGTTACAG GGCAAACTTCGCCTCGGATCTCACTGAGTCGGATCCAGGAAGCACTGACGCEST: gi|169028199|gb|FE432178.1|FE432178
genomic: AGGAACGTCGAGGCATTACTCTTGGCCCATCAGATCTTGCGAAGTTACAGgtaaagcttt ... gatcgtgcagGGCAAACTTCGCCTCGGATCTCACTGAGTCGGATCCAGGAAGCACTGACGC
EST: AGGAACGTCGAGGCATTACTCTTGGCCCATCAGATCTTGCGAAGTTACAG GGCAAACTTCGCCTCGGATCTCACTGAGTCGGATCCAGGAAGCACTGACGCEST: gi|169035867|gb|FE443258.1|FE443258
genomic: AGGAACGTCGAGGCATTACTCTTGGCCCATCAGATCTTGCGAAGTTACAGgtaaagcttt ... gatcgtgcagGGCAAACTTCGCCTCGGATCTCACTGAGTCGGATCCAGGAAGCACTGACGC
EST: AGGAACGTCGAGGCATTACTCTTGGCCCATCAGATCTTGCGAAGTTACAG GGCAAACTTCGCCTCGGATCTCACTGAGTCGGATCCAGGAAGCACTGACGCEST: gi|169028198|gb|FE432177.1|FE432177
genomic: AGGAACGTCGAGGCATTACTCTTGGCCCATCAGATCTTGCGAAGTTACAGgtaaagcttt ... gatcgtgcagGGCAAACTTCGCCTCGGATCTCACTGAGTCGGATCCAGGAAGCACTGACGC
EST: AGGAACGTCGAGGCATTACTCTTGGCCCATCAGATCTTGCGAAGTTACAG GGCAAACTTCGCCTCGGATCTCACTGAGTCGGATCCAGGAAGCACTGACGC
genomic: AGGAACGTCGAGGCATTACTCTTGGCCCATCAGATCTTGCGAAGTTACAGgtaaagcttt ... gatcgtgcagGGCAAACTTCGCCTCGGATCTCACTGAGTCGGATCCAGGAAGCACTGACGC
gtaaagctttttgtatccttggttgatatcattaagcaaccgatcgtgcagGGCAAACTTCGCCTCGGATCTCACTGAGTCGGATCCAGGAAGCACTGACGCTTTCTGGCATCACAAGGACGCTATCCTGTGCTGTACCTGGAAG
ggttgat putative branch site (score: 7)
atatcattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagctttttgtatccttggttgatatcattaagcaaccgatcgtgcagGGCAAACTTCGCCTCGGATCTCACTGAGTCGGATCCAGGAAGCACTGACGCTTTCTGGCATCACAAGGACGCTATCCTGTGCTGTACCTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG