Sequence
atgc intronic sequence ATGC exonic sequencegtatggggttcaaataagtgtccacgtagtaatcctcgttcgttttcagGTATTACAAATGGATTTTGGAGCGTAATTTCAGTGATCTGAACAAAGGCGTTCGTGGGAATCAG
Basic information
species | Selaginella moellendorffii |
transcript | EFJ29460 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ28029 (Selaginella moellendorffii), 3'ss of exon 15
lower sequence: LOC_Os07g46590.1 (Oryza sativa), 3'ss of exon 5
-----------------------gtatggggttcaaataagtgtccacgtagtaa---------tcctcgttcgttttcagGTATTACAAATGGATTTTGGAGCGTAATTTCAGTGATCTGAACAAAGGCGTTCGTGGGAATCAG
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gtaaatactttgtactaatgtaagtttatgttccttttattcatcattgagataaaatcatttttcctaattaattattagGTATTACAAATGGATTTTGGAGCGGAATTTCCAGAATCTCAACAAAGGAGTTCGTGGGAATCAG
upper sequence: EFJ28029 (Selaginella moellendorffii), 3'ss of exon 15
lower sequence: Vv06s0009g03750.t01 (Vitis vinifera), 3'ss of exon 16
-----------------------------------gtatggggttcaaataagtgtccacgtagtaatcct---cgttcgttttcagGTATTACAAATGGATTTTGGAGCGTAATTTCAGTGATCTGAACAAAGGCGTTCGTGGGAATCAG
| | |||| | | | || | | | | | | | || |||||||| || ||||||||||| || |||||| ||| |||||||||| |||||||||||||||
gttagtattatccttaacttgtatgaagtagtatcatttctggttatatcagttttctctattctcacctggtacttacattcatagGTATTATAAGTGGATTTTGGAACGCAATTTCCATGACTTGAACAAAGGAGTTCGTGGGAATCAG
upper sequence: EFJ28029 (Selaginella moellendorffii), 3'ss of exon 15
lower sequence: PP1S93_123V6.1 (Physcomitrella patens), 3'ss of exon 17
------------------------------------------------------------------------------------------------gtatggg-gttcaaataagtgtccacgtagtaatcctcgttcgttttca-gGTATTACAAATGGATTTTGGAGCGTAATTTCAGTGATCTGAACAAAGGCGTTCGTGGGAATCAG
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gtgagtttcatgttactaatcttacgtttagcagtacaaagcgtggaaaatcatgaaaatcattgcttgccagcaatgtttgtgtggaacgttagtatataaatactgagaaatatatctaacatctaccatttttatgttttcaagGTATTACAAATGGATCTTGGAGCGCAACTTCAATGATCTGAATAAGGGCGTTCGCGTAAATCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatggggttcaaataagtgtccacgtagtaatcctcgttcgttttcagGTATTACAAATGGATTTTGGAGCGTAATTTCAGTGATCTGAACAAAGGCGTTCGTGGGAATCAG
tcctcgttcgttttc CT-rich tract
ttcaaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatggggttcaaataagtgtccacgtagtaatcctcgttcgttttcagGTATTACAAATGGATTTTGGAGCGTAATTTCAGTGATCTGAACAAAGGCGTTCGTGGGAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG