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gtatgtatggcggcttttttttataaatttttttctctcgtggaagcctgaggctggatttctaaaatgcagGTCTAACCGCAGACGAGGTTCAAGCTTGTTTCTGGAAGG
species | Selaginella moellendorffii |
transcript | EFJ08215 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GCATCGAAAGTTTGTATACTTCGGAACATCAGTTCCAGCCATTTTCAGAG GTCTAACCGCAGACGAGGTTCAAGCTTGTTTCTGGAAGGEST: gi|169077269|gb|FE485155.1|FE485155
genomic: GCATCGAAAGTTTGTATACTTCGGAACATCAGTTCCAGCCATTTTCAGAGgtatgtatgg ... taaaatgcagGTCTAACCGCAGACGAGGTTCAAGCTTGTTTCTGGAAGG
EST: GCATCGAAAGTTTGTATACTTCGGAACATCAGTTCCAGCCATTTTCAGAG GTCTAACCGCAGACGAGGTTCAAGCTTGTTTTTGGAAAGEST: gi|169110368|gb|FE512127.1|FE512127
genomic: GCATCGAAAGTTTGTATACTTCGGAACATCAGTTCCAGCCATTTTCAGAGgtatgtatgg ... taaaatgcagGTCTAACCGCAGACGAGGTTCAAGCTTGTTTCTGGAAGG
EST: GCATCGAAAGTTTGTATACTTCGGAACATCAGTTCCAGCCATTTTCAGAG GTCTAACCGCAGACGAGGTTCAAGCTTGTTTCTGGAAGGEST: gi|169044209|gb|FE452939.1|FE452939
genomic: GCATCGAAAGTTTGTATACTTCGGAACATCAGTTCCAGCCATTTTCAGAGgtatgtatgg ... taaaatgcagGTCTAACCGCAGACGAGGTTCAAGCTTGTTTCTGGAAGG
EST: GCATCGAAAGTTTGTATACTTCGGAACATCAGTTCCAGCCATTTTCAGAG GTCTAACCGCAGACGAGGTTCAAGCTTGTTTCTGGAAAGEST: gi|169064930|gb|FE475626.1|FE475626
genomic: GCATCGAAAGTTTGTATACTTCGGAACATCAGTTCCAGCCATTTTCAGAGgtatgtatgg ... taaaatgcagGTCTAACCGCAGACGAGGTTCAAGCTTGTTTCTGGAAGG
EST: GCATCGAAAGTTTGTATACTTCGGAACATCAGTTCCAGCCATTTTCAGAG GTCTAACCGCAGACGAGGTTCAAGCTTGTTTCTGGAAAG
genomic: GCATCGAAAGTTTGTATACTTCGGAACATCAGTTCCAGCCATTTTCAGAGgtatgtatgg ... taaaatgcagGTCTAACCGCAGACGAGGTTCAAGCTTGTTTCTGGAAGG
tttttataaatttttttctctcgtggaagcctgaggctggatttctaaaatgcagGTCTAACCGCAGACGAGGTTCAAGCTTGTTTCTGGAAGG
ttctaaa putative branch site (score: 10)
tttct CT-rich tract
ataaatttttttctct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatggcggcttttttttataaatttttttctctcgtggaagcctgaggctggatttctaaaatgcagGTCTAACCGCAGACGAGGTTCAAGCTTGTTTCTGGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG