1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgaatgctactaaacttttaagattacctctgtgctaacacacgaagtctattgcagGTTCTACTTCACGAAGGTGGGACTTTACTCGTTTGCGTCAACTCGGTTCGTGCCTTGAATGAGCCCTTGTGGTCGTCACAATGGAGAAGAGATATGGTAA
species | Selaginella moellendorffii |
transcript | EFJ12346 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TAGTGGCTGCATTGTCTTCTGTGGGAGGGCTACTTCCACTGTGGATAACG GTTCTACTTCACGAAGGTGGGACTTTACTCGTTTGCGTCAACTCGGTTCGTEST: gi|169056582|gb|FE465900.1|FE465900
genomic: TAGTGGCTGCATTGTCTTCTGTGGGAGGGCTACTTCCACTGTGGATAACGgtgaatgcta ... tctattgcagGTTCTACTTCACGAAGGTGGGACTTTACTCGTTTGCGTCAACTCGGTTCGT
EST: TAGTGGCCGCATTGTCTTCTGTGGGAGGGCTGCTTCCACTGTGGATAACG GTTCTACTTCACGAAGGTGGGACTTTACTCGTTTGCGTCAACTCGGTTCGTEST: gi|169097940|gb|FE500397.1|FE500397
genomic: TAGTGGCTGCATTGTCTTCTGTGGGAGGGCTACTTCCACTGTGGATAACGgtgaatgcta ... tctattgcagGTTCTACTTCACGAAGGTGGGACTTTACTCGTTTGCGTCAACTCGGTTCGT
EST: TAGTGGCTGCATTGTCTTCTGTGGGAGGGCTACTTCCACTGTGGATAACG GTTCTACTTCACGAAGGTGGGACTTTACTCGTTTGCGTCAACTCGGTTCGT
genomic: TAGTGGCTGCATTGTCTTCTGTGGGAGGGCTACTTCCACTGTGGATAACGgtgaatgcta ... tctattgcagGTTCTACTTCACGAAGGTGGGACTTTACTCGTTTGCGTCAACTCGGTTCGT
aatgctactaaacttttaagattacctctgtgctaacacacgaagtctattgcagGTTCTACTTCACGAAGGTGGGACTTTACTCGTTTGCGTCAACTCGGTTCGTGCCTTGAATGAGCCCTTGTGGTCGTCACAATGGAGAAGAGATATGGTAA
tgctaac putative branch site (score: 9)
taaacttttaagatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatgctactaaacttttaagattacctctgtgctaacacacgaagtctattgcagGTTCTACTTCACGAAGGTGGGACTTTACTCGTTTGCGTCAACTCGGTTCGTGCCTTGAATGAGCCCTTGTGGTCGTCACAATGGAGAAGAGATATGGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA