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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctatggataggtttcatggaatggcaatatgttagctcgttttcgctcgtcacagGCCATCGACTCAAGAGATGCGTTGGCAAAAGCCATATATTCCTGTTTATTTGAGTGGCTGGTTGAAAAGATAAACAACTCTCTGGACGCCGGAAAAGCTT

Basic information

species Selaginella moellendorffii
transcript EFJ05534
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ05534 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 12
-----------------------------------------gtatgctatggataggtttcatggaatggcaatatgttagctcgttttcgctcgtcacagGCCATCGACTCAAGAGATGCGTTGGCAAAAGCCATATATTCCTGTTTATTTGAGTGGCTGGTTGAAAAGATAAACAACTCTCTGGACGCCGGAAAAGCTT
                                         | ||  |    | |  |||      |||   || | | |  || | ||  |   |  |||||||| ||| |||||||||| ||||| ||| | || ||| | ||||||||||| |||||||| ||| | || ||||| || || |  |  ||||||    
gtctaatttttgaatttggagtaacttggataaaattccacggatatttgtaagacattttcccctatgattat-tatcaaatcttgttttcgtcttccagGCCATTGACACAAGAGATGCTTTGGCGAAATCAATTTATGCTTGTTTATTTGACTGGCTGGTCGAACAAATCAACAAGTCACTTGCTGTAGGAAAACGGC

upper sequence: EFJ05534 (Selaginella moellendorffii), 3'ss of exon 11
lower sequence: PP1S199_21V6.1 (Physcomitrella patens), 3'ss of exon 12
-----------------------------------------gtatgctatggataggttt-catggaatggcaatatgttagctcgttttcgctcgtcacagGCCATCGACTCAAGAGATGCGTTGGCAAAAGCCATATATTCCTGTTTATTTGAGTGGCTGGTTGAAAAGATAAACAACTCTCTGGACGCCGGAAAAGCTT
                                         ||     | ||  | || |   ||||    |   ||  |  | |   ||   | ||  ||||| | |||||||||||||||| | || |||||||| |||||||  || ||||| ||||||||| ||    | ||||| ||| |||| |  || ||| |  
gactgtccatgctagttcaatagagctgagattacctacaagtgcaggaaggtaatgtctatttggagatacgtcattcttacacaggttt--ttgttgcagGCAACCGACTCAAGAGATGCGCTTGCTAAAGCCATTTATTCCTACTTGTTTGATTGGCTGGTTCAACGTGTCAACAAGTCTTTGGAAGTTGGCAAAACAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatggataggtttcatggaatggcaatatgttagctcgttttcgctcgtcacagGCCATCGACTCAAGAGATGCGTTGGCAAAAGCCATATATTCCTGTTTATTTGAGTGGCTGGTTGAAAAGATAAACAACTCTCTGGACGCCGGAAAAGCTT
                                       ttttcgctc  CT-rich tract
                         aatatgtta  TA-rich tract