1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgagtccctgaggcctttgcgttgatttctttcttgataaatcccgcttgtcaaccgtttcactagGCCAGTACCAATGACGAATGGTGTAAAGAAACTGCGCGGTCACTGAGGCGCCTCTCGCCAATTGCGCTCAAGCAAGCCTTAGCATCG
species | Selaginella moellendorffii |
transcript | EFJ26684 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TAAACAGCTGCTTCTCGAAAGACCGAGTTGAAGAGATAATCGAGTCTCTG GCCAGTACCAATGACGAATGGTGTAAAGAAACTGCGCGGTCACTGAGGCGCEST: gi|169049965|gb|FE458057.1|FE458057
genomic: TAAACAGCTGCTTCTCGAAAGACCGAGTTGAAGAGATAATCGAGTCTCTGgtgagtccct ... gtttcactagGCCAGTACCAATGACGAATGGTGTAAAGAAACTGCGCGGTCACTGAGGCGC
EST: TAAACAGCTGCTTCTCGAAAGACCGAGTTGAAGAGATAATCGAGTCTCTG GCCAGTACCAATGACGAATGGTGTAAAGAAACTGCGCGGTCACTGAGGCGCEST: gi|169038317|gb|FE445316.1|FE445316
genomic: TAAACAGCTGCTTCTCGAAAGACCGAGTTGAAGAGATAATCGAGTCTCTGgtgagtccct ... gtttcactagGCCAGTACCAATGACGAATGGTGTAAAGAAACTGCGCGGTCACTGAGGCGC
EST: TAAACAGCTGCTTCTCGAAAGACCGAGTTGAAGAGATAATCGAGTCTCTG GCCAGTACCAATGACGAATGGTGTAAAGAAACTGCGCGGTCACTGAGGCGC
genomic: TAAACAGCTGCTTCTCGAAAGACCGAGTTGAAGAGATAATCGAGTCTCTGgtgagtccct ... gtttcactagGCCAGTACCAATGACGAATGGTGTAAAGAAACTGCGCGGTCACTGAGGCGC
ggcctttgcgttgatttctttcttgataaatcccgcttgtcaaccgtttcactagGCCAGTACCAATGACGAATGGTGTAAAGAAACTGCGCGGTCACTGAGGCGCCTCTCGCCAATTGCGCTCAAGCAAGCCTTAGCATCG
tcttgat putative branch site (score: 11)
ccgtttc putative PPT
ttgataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtccctgaggcctttgcgttgatttctttcttgataaatcccgcttgtcaaccgtttcactagGCCAGTACCAATGACGAATGGTGTAAAGAAACTGCGCGGTCACTGAGGCGCCTCTCGCCAATTGCGCTCAAGCAAGCCTTAGCATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG