1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttggtgtggtgtggtgtgatttttttttttttttgctcaaagctttggttttgatcgttttgcgtggtgatattgtttgcgcagGATAAGTGGGCTAAGAATCTCTATATAGCAGCTGTTTGTTACGGACGAACAGTGTCATGAGCCATGTAATATCAAGGAGACAAAAACAAATAATTTGGGT
species | Selaginella moellendorffii |
transcript | EFJ19085 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGACGCAAGAAACGCTGCGAACGTCGGCTTTCCCGAGCAGCCACGTAAAG GATAAGTGGGCTAAGAATCTCTATATAGCAGCTGTTTGTTACGGACGAACAEST: gi|169073660|gb|FE483946.1|FE483946
genomic: AGACGCAAGAAACGCTGCGAACGTCGGCTTTCCCGAGCAGCCACGTAAAGgttggtgtgg ... gtttgcgcagGATAAGTGGGCTAAGAATCTCTATATAGCAGCTGTTTGTTACGGACGAACA
EST: AGACGCAAGAAACGCTGCGAACGTCGGCTTTCCCGAGCAGCCACGTAAAG GATAAGTGGGCTAAGAATCTCTATATAGCAGCTGTTTGTTACGGACGAACAEST: gi|169073661|gb|FE483947.1|FE483947
genomic: AGACGCAAGAAACGCTGCGAACGTCGGCTTTCCCGAGCAGCCACGTAAAGgttggtgtgg ... gtttgcgcagGATAAGTGGGCTAAGAATCTCTATATAGCAGCTGTTTGTTACGGACGAACA
EST: AGACGCAAGAAACGCTGCGAACGTCGGCTTTCCCGAGCAGCCACGTAAAG GATAAGTGGGCTAAGAATCTCTATATAGCAGCTGTTTGTTACGGACGAACA
genomic: AGACGCAAGAAACGCTGCGAACGTCGGCTTTCCCGAGCAGCCACGTAAAGgttggtgtgg ... gtttgcgcagGATAAGTGGGCTAAGAATCTCTATATAGCAGCTGTTTGTTACGGACGAACA
tttttgctcaaagctttggttttgatcgttttgcgtggtgatattgtttgcgcagGATAAGTGGGCTAAGAATCTCTATATAGCAGCTGTTTGTTACGGACGAACAGTGTCATGAGCCATGTAATATCAAGGAGACAAAAACAAATAATTTGGGT
ttttgat putative branch site (score: 42)
atattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtgtggtgtggtgtgatttttttttttttttgctcaaagctttggttttgatcgttttgcgtggtgatattgtttgcgcagGATAAGTGGGCTAAGAATCTCTATATAGCAGCTGTTTGTTACGGACGAACAGTGTCATGAGCCATGTAATATCAAGGAGACAAAAACAAATAATTTGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA