Sequence
atgc intronic sequence ATGC exonic sequencegtatgttacgttgtgattacactccactaattacagttcttgatcgtccagACAAATGTGGGAACTGTGGATGCACATGTTGCAGATTATCAACGAATGATTGACAATCTTCAG
Basic information
species | Selaginella moellendorffii |
transcript | EFJ09876 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ09876 (Selaginella moellendorffii), 3'ss of exon 10
lower sequence: PP1S7_82V6.1 (Physcomitrella patens), 3'ss of exon 10
---------------------------------------------------gtatgttacgttgtgattacactccactaattacagttcttgatcgtccagACAAATGTGGGAACTGTGGATGCACATGTTGCAGATTATCAACGAATGATTGACAATCTTCAG
|| | || | || | | | | ||||| | | |||||||||||||||||||||||||| ||||||||||| ||||| | |||||| |||||||||||
cgggtacctgtgcgggagtgttcaggtgtgttagactagtcaaattcgcacaaatcattcgcgatatttgaagactcaccacaaggattcttttttg--cagACAAATGTGGGAACTGTGGATGCGCATGTTGCAGACTATCAGCAAATGATAGACAATCTTCAA
upper sequence: EFJ09876 (Selaginella moellendorffii), 3'ss of exon 10
lower sequence: PP1S249_44V6.1 (Physcomitrella patens), 3'ss of exon 11
--------------------------------------gtatgttacgttgtgattacactccact---aattacagttcttgatcgtc--------cagACAAATGTGGGAACTGTGGATGCACATGTTGCAGATTATCAACGAATGATTGACAATCTTCAG
|| | | | || ||| | || ||| ||| | ||| |||| ||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||| ||
caggtatctgaggggcagtgtttaactgttcggaacctgtcaaacagctcaaaagcacgctcagttttgaaatacttaccttagttgtcatcgtttgcagAAAAATGTGGGAACTGTGGATGCTCATGTTGCTGACTATCAACAAATGATTGACAATCTCCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatgttacgttgtgattacactccactaattacagttcttgatcgtccagACAAATGTGGGAACTGTGGATGCACATGTTGCAGATTATCAACGAATGATTGACAATCTTCAG
actaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttacgttgtgattacactccactaattacagttcttgatcgtccagACAAATGTGGGAACTGTGGATGCACATGTTGCAGATTATCAACGAATGATTGACAATCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT