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gtacgtactccagaatctgtgtccggttggatttcttatccttgactgcagGGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGATTCCCACAAGAAAATCATGGATG
species | Selaginella moellendorffii |
transcript | EFJ08380 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAA GGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGATEST: gi|169035021|gb|FE444856.1|FE444856
genomic: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAAgtacgtactc ... ttgactgcagGGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGAT
EST: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAA GGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGATEST: gi|169035022|gb|FE444857.1|FE444857
genomic: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAAgtacgtactc ... ttgactgcagGGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGAT
EST: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAA GGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAGAAGAAAAAGAAGATEST: gi|169109304|gb|FE512832.1|FE512832
genomic: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAAgtacgtactc ... ttgactgcagGGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGAT
EST: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAA GGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGATEST: gi|169029748|gb|FE440994.1|FE440994
genomic: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAAgtacgtactc ... ttgactgcagGGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGAT
EST: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAA GGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGATEST: gi|169031907|gb|FE438514.1|FE438514
genomic: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAAgtacgtactc ... ttgactgcagGGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGAT
EST: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAA GGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGATEST: gi|169083539|gb|FE491411.1|FE491411
genomic: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAAgtacgtactc ... ttgactgcagGGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGAT
EST: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAA GGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGATEST: gi|169037976|gb|FE446626.1|FE446626
genomic: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAAgtacgtactc ... ttgactgcagGGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGAT
EST: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAA GGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGAT
genomic: AATGCCGACTTTATGTCCAAAATCAAACTGCGGGAGATGCTCATGCCAAAgtacgtactc ... ttgactgcagGGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGAT
gtacgtactccagaatctgtgtccggttggatttcttatccttgactgcagGGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGATTCCCACAAGAAAATCATGGATG
ccttgac putative branch site (score: 22)
tttcttatcctt CT-rich tract
atttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtactccagaatctgtgtccggttggatttcttatccttgactgcagGGTTGTTATACTAAGTGACGATGAGATTGCTTTTCAAAAGAAAAAGAAGATTCCCACAAGAAAATCATGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA