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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttagttctctcgaaactcttgttccttcttctttgtttttcgggagttcttatgtttttctcttcctttctcagGAACTTCTCGCGATCCAACAACAAGGGCCAAGAGCTATCGGCTTCTTCGGAACGCGAAACATGGGATTCATGCATCAACAGCTTATTGAGATACTTAGTT

Basic information

species Selaginella moellendorffii
transcript EFJ38716
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ38716 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os01g23680.1 (Oryza sativa), 3'ss of exon 2
----------------------------------------------------------------------------------------------------------------------gtaagttcttagttctctcgaaactcttgttccttcttctttgtttttcgggagttcttatgtttttctcttcctttctcagGAACTTCTCGCGATCCAACAACAAGGGCCAAGAGCTATCGGCTTCTTCGGAACGCGAAACATGGGATTCATGCATCAACAGCTTATTGAGATACTTAGTT
                                                                                                                       |    |    | |   | | |   | |||      || ||| | ||   | | |  |  | ||    |  |  |    |||||  | || || || || ||||| || ||  | ||||| || || || || || || |||||||| || ||||||||||||||||||||||| || || |
gtggctttctctttcctttttctattgtgtccattcaatttaacaaagtcagtttttgcctagtagtttctgtaaatatgtttggggccaacagatatcttccatgctgttcatcctcatccaatgaatgataaatagcataacatgtatgaaattatttatattatagaa-tgatcttattcacttagtggtaatgcagGAGTTGCTGGCTATTCAGCAACAGGGACCGCGGGCTATAGGTTTTTTTGGTACCCGTAACATGGGGTTTATGCATCAACAGCTTATTGAGATCCTGAGCT

upper sequence: EFJ38716 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G081653_T02 (Zea mays), 3'ss of exon 2
---------------------------------------------------------------------------------------------------gtaagttcttagttct-ctcgaaactcttgttccttcttctttgtttt----tcgggagttcttatgtttttctcttcctttctcagGAACTTCTCGCGATCCAACAACAAGGGCCAAGAGCTATCGGCTTCTTCGGAACGCGAAACATGGGATTCATGCATCAACAGCTTATTGAGATACTTAGTT
                                                                                                      | |  | | | || ||    |    ||  | || |   ||| |||    |  | |||       ||| | |  |  |     |||| || || || || || || ||||| ||  | || || || ||||| ||||| || ||||||||||| ||||| ||||||||||||||||| || || |
gtacttttttctgatcattttatactgaactgtttttttattaaaatttaagtttaatggttcttaaacctttcaaagttggtgtgatacaatcagaaatccaataatgaatgctacttagcatgtatgagctttatgaattgatttatcctatgaagtggactcatttattttgtggtcatgaagGAGCTGCTGGCTATTCAGCAGCAAGGACCTCGTGCAATAGGTTTCTTTGGAACCCGCAACATGGGATTTATGCACCAACAGCTTATTGAGATCCTGAGCT

upper sequence: EFJ38716 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA17G00330.1 (Glycine max), 3'ss of exon 2
-------------------gtaagttct--tagttctctcgaaactcttgttccttcttctttgtttttcgggagttcttatgtttttctcttcctttctcagGAACTTCTCGCGATCCAACAACAAGGGCCAAGAGCTATCGGCTTCTTCGGAACGCGAAACATGGGATTCATGCATCAACAGCTTATTGAGATACTTAGTT
                       ||||   ||||       || | |   |||   |  ||| ||| | |   | ||   |     || | ||  |||  |||||  |  | || || ||||| ||||| || |||||||| ||||| || ||||| || ||||||||||||||||| ||| | || |||||||| ||||| |
gttttaactcaagtatttgtccggttccggtagtgtgtatcaatcacacattcgcacc-cttagttgtacaacattttgaacagaattttgtt--ttttacagGAGTTATTGGCCATTCAACAGCAAGGACCTAGAGCTATTGGCTTTTTTGGAACTCGGAACATGGGATTCATGCACCAAGAACTAATTGAGATTCTTAGCT

upper sequence: EFJ38716 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA07G40350.2 (Glycine max), 3'ss of exon 2
---------------gtaagttcttagttctct--cgaaactcttgtt--ccttcttctttgtttttcgggagttcttatgtttttctcttcctttctcagGAACTTCTCGCGATCCAACAACAAGGGCCAAGAGCTATCGGCTTCTTCGGAACGCGAAACATGGGATTCATGCATCAACAGCTTATTGAGATACTTAGTT
                ||   |||| || || |   | |   | |||    |     | | ||| | | | | ||   |  |  || | || ||||  |||||  |  | || || ||||| ||||| || |||||||| ||||| || ||||| || ||||||||||||||||| ||| | || |||||||| ||||| |
aattgttgccttgtgctatactctttgtcctgtactgtagtgcatgtcaaacacacccatagttgtacagcattttgaacttcattatgtttcttta-cagGAGTTATTGGCCATTCAACAGCAAGGACCTAGAGCTATTGGCTTTTTTGGAACTCGGAACATGGGATTCATGCACCAAGAACTAATTGAGATTCTTAGCT

upper sequence: EFJ38716 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT3G59870.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaagtt--cttagttctctcgaaactcttgttccttcttctttgtttttcgggagttcttatgtttttctcttcct----ttctcagGAACTTCTCGCGATCCAACAACAAGGGCCAAGAGCTATCGGCTTCTTCGGAACGCGAAACATGGGATTCATGCATCAACAGCTTATTGAGATACTTAGTT
|||||||    ||  | |  |        || |       |     ||||       | ||| ||| |   | |       ||  ||||||||  | || || || |||||||| |||||| | || |||||||| |||||  |||| ||||| |||||||||||| |||| ||| |||| ||||| |
gtaagttaatctaaatttgactgcctagatgatggaagaccaaatgttttatcagtcttttaggttgtaaccatatgcgaattggcagGAACTGTTGGCTATACAGCAACAAGGACCAAGAACAATTGGCTTCTTTGGAACTAGAAATATGGGTTTCATGCATCAAGAGCTCATTCAGATTCTTAGCT

upper sequence: EFJ38716 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv10s0042g00120.t01 (Vitis vinifera), 3'ss of exon 1
------------gtaagttcttagttc--tctcgaaac-tcttgttccttcttctttg-----tttttcgggagttcttatgtttttctcttcctttctcagGAACTTCTCGCGATCCAACAACAAGGGCCAAGAGCTATCGGCTTCTTCGGAACGCGAAACATGGGATTCATGCATCAACAGCTTATTGAGATACTTAGTT
             | | |   |  | |    | ||| |  | || |    | | | ||     || || |||  | | ||| ||| | |  |  |||  |||||  |  | || || |||||| |||||||||||||||| |||||||| || || ||||| ||||||||| |||||||| | ||||| ||||| || || |
ccataattccatatgattctctgttgcaacatggaagcaccctgctttcccctttctgctaatttctttgggtatgcctatatttattttat--ttttgcagGAGTTATTGGCCATTCAACAAGAAGGGCCAAGAGCTATTGGCTTCTTTGGGACACGAAATATGGGATTCCTGCATCAAGAACTTATCGAGATCCTGAGCT

upper sequence: EFJ38716 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv05s0094g01380.t01 (Vitis vinifera), 3'ss of exon 3
-----------gtaag--ttcttagttctctcgaaactcttgttccttcttctttgtttttcgggagttcttatgtttttctct-----tcctttctcagGAACTTCTCGCGATCCAACAACAAGGGCCAAGAGCTATCGGCTTCTTCGGAACGCGAAACATGGGATTCATGCATCAACAGCTTATTGAGATACTTAGTT
           | |||  ||||  ||| || |    || ||| |  || |       || | | |  || | | |||  | | |     |  |||  |||||  |  | || |||||||||||||||||||||||||| || ||||| || ||  | || ||||||||||  |||||| | ||||||||||| || || |
agttgcaatgagcaagcattctaggttttcccctttctattgatttttatgaacatcttattgtggattttaaagttgctatgtgcgaattattttgcagGAGTTATTGGCCATCCAACAACAAGGGCCAAGAGCTATTGGGTTCTTTGGGACAAGGAATATGGGATTCACACATCAAGAACTTATTGAGATTCTCAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttccttcttctttgtttttcgggagttcttatgtttttctcttcctttctcagGAACTTCTCGCGATCCAACAACAAGGGCCAAGAGCTATCGGCTTCTTCGGAACGCGAAACATGGGATTCATGCATCAACAGCTTATTGAGATACTTAGTT
                           ttcttatgtttttctc  CT-rich tract
                              ttatgttttt  TA-rich tract