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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattagttctcctttttttttttctttttttttcccccccacgtttagtgctctgatcttcttcgtctttccagCACACTCCATCAAGCGCTTTCAATTCTTCTTTTTTCACCACAAACTCTGGCACTCCCGTCTGGAACAACAATTCCTCTTTGACAGTTGGGTCACGAG

Basic information

species Selaginella moellendorffii
transcript EFJ33688
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169032372|gb|FE440929.1|FE440929
EST:     AGCAAAGCTATGGATCCTTACAAG                         CACACTCCATCAAGCGCTTTCAATTCTTCTTTTTTCACCACAAACTCTGGC
genomic: AGCAAAGCTATGGATCCTTACAAGgtattagttc ... gtctttccagCACACTCCATCAAGCGCTTTCAATTCTTCTTTTTTCACCACAAACTCTGGC
EST: gi|169022284|gb|FE431243.1|FE431243
EST:     GATGATTCCTTCTTTATTTTCTTGATAGCAAAGCTATGGATCCTTACAAG                         CACACTCCATCAAGCGCTTTCAATTCTTCTTTTTTCACCACAAACTCTGGC
genomic: GATGATTCCTTCTTTATTTTCTTGATAGCAAAGCTATGGATCCTTACAAGgtattagttc ... gtctttccagCACACTCCATCAAGCGCTTTCAATTCTTCTTTTTTCACCACAAACTCTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctttttttttcccccccacgtttagtgctctgatcttcttcgtctttccagCACACTCCATCAAGCGCTTTCAATTCTTCTTTTTTCACCACAAACTCTGGCACTCCCGTCTGGAACAACAATTCCTCTTTGACAGTTGGGTCACGAG
                               ctctgat  putative branch site (score: 4)
                               ctctgatcttcttcgt  CT-rich tract
     ttttttttt  TA-rich tract