Sequence
atgc intronic sequence ATGC exonic sequencegtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
Basic information
| species | Selaginella moellendorffii |
| transcript | EFJ32131 |
| intron # | 1 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os06g01480.1 (Oryza sativa), 3'ss of exon 3
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatg--aattgcgtttgccacaca----cagAACGGTGCCGAATTGGCTCCGC-GGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | || || | || | | | | | | | | | | | | | || | || | || |||| | | | | | | | || || | ||| | | || | || || | ||| || ||||||| |||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||
----gtcagtactcagtacag-tacgtacat-gcatgcatatgatagatgtgtacaa-tattcgtgtgctaattaagccagcaataattaactgggagtataaccatgcatgcagAGCGTTGCCGGATCAATGGCGGGTCGGCGGCGGAGGAGCAGAACGAATGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGAGGACCAA------------
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os02g15340.1 (Oryza sativa), 3'ss of exon 2
--------------------------------------------gtaagacggtcatccct-caagcttct-catttcggaaaaaaaaaaccgttctttggaagtc--tttgcg-ttctaaatgt--ctcttctctcactgccatcgatgaat-tgcgtttgc-cacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
|| | | || | | ||| | | || | || || | || || | || || ||||| | || | | || | || | | |||| | |||| || ||| | ||||| | | || |||| | ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| | ||||| |
gtataaacacatatgcttgctaattaattaactagcacttctttagaaaatgaacaaacttacaaatgtatatgttgtgttggtgcttaatttttttcacaaaatcacctaacgattttaaatttaactttatgaatatattgattaacatatatatggttgcattgatgcagATCGATGCAGGATTGGGACGGGGGCGCAGGAGGAGTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGAGGACCAACCGCGCCACGGT
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os06g33940.1 (Oryza sativa), 3'ss of exon 2
-----------gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | ||| | |||| || | | | | || | | || || || || | || || | || | | ||||| |||||| | || || | | | ||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||| | || ||
gtaaaattgaaattgagcaatcaatcagtcagctcatctagctagccggccggagctagcaagcatgcaacagtgagatttagctgaagtttaaa-catggtgattaatatttcatgtggtatatatacagATCGGTGCAGGATAGGGACGGGGCCTCAGAACGAGTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGAGGACGAACCGGGCGACGAC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os08g02300.1 (Oryza sativa), 3'ss of exon 1
------------------------gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctct-cactgccatcgatg--aattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
|| || | ||| |||||| || | | ||| || | | | | || | | || | || | || || | | | |||| |||| ||||| || | | |||| |||| |||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| || || |
gtagctaagctagtattcctcatcatataacctttctcctctccaattctcaatttctagctaccaaatcgatgatggatttatcaatcaatcgagctaagctagctaagtaatggtgtgtgtgcaaaatatatattgtggttgcagAGAGGTGTAAGATTGGGTCAGGGCCGCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGAGGACGAACAGGGCGACGGC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os06g04090.1 (Oryza sativa), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcac-tgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | | || | | | | | | || || || || | || | | | | || | || ||| || || | | | | |||| ||||| | ||||| || | | ||| |||| |||||||||||||||||||| |||||||| |||||||| ||||||||||| ||| | || || |
---------------------gtacgtaattaagcacacacacatcgatc-----aattcgatcgatttttgacatgttttgatcaatgtggcatgtgtgtatcatacatac-atatgcagAGAGGTGCAGGATTGGGTCAGGGCCGCAAAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGAGGACGAACCGGGCAACGGC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os10g38834.1 (Oryza sativa), 3'ss of exon 2
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | | ||| | | | | | | | | | | || ||| || | | | ||| ||| |||| | | | ||| | ||| | || || | || ||||||| ||||||||||||||||||| |||| |||| ||| |||||||| ||||||||||| ||||| || ||
---gtttaattaatcttcatacatatatacttaatttcatgcatgcatagctagatcaatcgagctagctatatatagatcgatgc-tgatcatgcatggattggggtgg--gtgagaagAGCATTGCAGGATAGGGTACGAGGAGCAGAGCGAGTGGTACTTCTTCAGCTACAAGGACAGGAAGTACCCGACGGGGACGAGGACGAACAGGGCGACGAT
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os03g03540.1 (Oryza sativa), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| || | | | || | || || | | | || | | | | || | || | || ||| ||| | ||||| || | || || | || ||||| ||||||||||||||||||| |||| |||| ||| |||||||| ||||||||||| ||||| || ||
------------------gtacaactagagatcgtatgattaatttgagtttcagagatgat--cattgtggcattatttatcctaattgtgttgcctggtttg---ttgattgatgaagAACATTGTGGGATCGGGTACGATGAGCAAAGCGAGTGGTACTTCTTCAGCTACAAGGACAGGAAGTACCCGACGGGGACGAGGACGAACAGGGCGACAAT
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os02g42970.1 (Oryza sativa), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaa--aaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | | || || | | || ||||||| | || || |||||| | || || | | ||| | ||| | |||| |||| |||||| | || ||| | || |||||||||||||||||||||||||| || |||||||| || || | |||||| | ||||| ||
-----gtaattagcatgcatgcaagttgatcgaagaatcaaaaaaatcaaagttagg-----tttgcgattgaattgagcatcc-------aacatgtacaaatattg-----------cagAGAAGTGCAAGATTGGCATGGAAGAACAGAATGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCGACGGGCACCCGCACCAACCGGGCCACGGG
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: 13113.m00212 (Oryza sativa), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttct----ttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacaca------cagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
||||| | ||| | || | | ||| | | | | ||| | | | | || | | | |||| | |||| ||||| | || || || ||| |||| ||||||||||||||||||||||||| ||| || |||||||| ||| ||||||| ||| | |||||
----------------------------ggtcggagatgtaaatcattttcattatctaagctctctccatcatgcatgcatggccatgga--ggtgacgggggttgccatttgttgcgtgtgtgtgcagAGAGGTGCAGGATCGGGTCGGCGCCGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACCGCAAGTACCCGACGGGGTCGAGGACGAACCGCGCCACGAC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os08g01330.1 (Oryza sativa), 3'ss of exon 1
------------gtaagacggtca-tccctcaagcttctcattt-cggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatg-tctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| || | | | || || | ||| | | || || | | | | |||| | || || | || | | || | || || | | || |||||| | |||| || |||||| |||||||||||||||||| |||| ||| || ||||| | |||||||||||||||| |
gtacgtactgatccattacattaaataaaccatgcattctattcatgcataattaatatcaattcagcaattaatttgggaactgaacgatcgatgattctgatgaattatatatatgtggcagAGCGTTGCAAGTACGGTG--GGCATGGCGGCGATGAGCAGACGGAGTGGTACTTCTTCAGCTACAAGGACCGCAAGTACCCCAGCGGGACGAGGACCAACCG---------
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G354151_T01 (Zea mays), 3'ss of exon 3
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgt-tctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| || || | | | | | | | | | | | | || || | | ||| ||| | || |||| |||| || || | | ||||||| ||||||||||||||||||||||||| |||||||| |||||||| || || | || ||| | || |||
--------------------------------gtaagaagtacattaattctgaaacaagtatatatatacatacatagctgctgctaaatagacacatgcattttggaatgggcatgcagAGAAGTGCAAGATCGGGACGGAGGAGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGCACCCGCACAAACCGGGCGACCAC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G178998_T01 (Zea mays), 3'ss of exon 3
----------------------------------------------------------------gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgtt-----ctaaatgtctct---tctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| ||| | |||||| ||| | | || || || | ||||| | |||| || | || || | | | | || ||| | || | || || | | |||||| |||| | ||||| || |||||| ||||||||||||||||||||||||| |||||||| ||||| ||||| || | ||||||||||| ||
gtacatcaacctaaactcgatttgtactccgagcttgcatgatgagacataaaactgtacttagctgagatatgtacacctcaaag----catgtgtggaacaacaagc--ttcttgtggagtcattatgcatgaagctcaacggttataagccgctaactcacttctacatatgcatggtgacgaa-acagAAAAGTGCAGGATTGGAAGCGAAGAGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCAACCGGCACTCGCACCAACAGAGCGACGAC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G440219_T01 (Zea mays), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
|| || | || || | | | | | | | |||||| ||| | | | | || || | ||| || | | | || |||| || | | ||| | ||||||| ||||||||||||||||||||||||| |||||||| |||||||| || || |||||||| |
-----acaaatattcgagaacggagacactactgctatata----cattctttcagagtatg-gtatatcacatcctcctacgacacatgcacattattattattagcagACAAGTGCAGACTGG-GAGGCCCTGGTGAGGAGGAGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGCACCCGGACCAACCG---------
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G171395_T01 (Zea mays), 3'ss of exon 1
----------------------gtaag-acggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccac--acacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | | | | | | || | | || | ||| | | | | | | | | ||| | | || | | | | | | | ||| | | | | || | |||| |||||| || || || | ||| |||| |||||||||||||||||||| |||||||| |||||||| |||||| | |||||| | |||||||
gtagtactacgctgttacgcacgcacgcgcttgcttgctgcatacatgtctatgcggccatgcata--catgcctctgccgtccgtctgccctccccgatgcatatatggccgatcctgatcg-tcgagccggtgaccgatgcagAGAAGTGCCGCATCGGTTCGGGCCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACCGC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G069047_T01 (Zea mays), 3'ss of exon 1
------------------------------------------------------------------gtaagac--ggtcatccctcaagcttc-----tcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctc-tcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
|| || | || || | |||| || | | | | ||| || || | ||| | ||| | || || || | | || ||| | ||| | |||| | ||| || || || | ||| |||| |||||||||||||||||||| |||||||| |||||||| |||||| | |||||| | || || |
gtacggtatacttaccaccatataccttccatctccgaggtccgagcaaagcatcagctcgtgatcataggatcggatcggagctggtgacctgatggtcatgtcacacgagcatgaacgtgagctgatcatcgt-acgtcc---atggcgctgatcatcggggttagttatcgattctgcgtgc---atgcagAGAGATGCAAGATCGGGTCGGGTCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCTACGGC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G041746_T01 (Zea mays), 3'ss of exon 2
--------------------------------------------------------------gtaagacggtcatccct--caagct---tctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctca------ctgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
|| | | | | | |||| ||| || | | | | | | || | || || || | || | || || || ||| | | ||||| ||||| | || ||| ||| | | ||| ||||||||||||||||||||||||| |||||||| |||||||| || || ||||| ||| | |||||
gtaagtaaaatacatgtatgtatatgtcattttgtgtgcaaacagctagcaaacatatacttgttatatatatacctgcagcgagctagatctgatgttgctagctagctagacctaattaatttttttgcaaatcaaagagataactcacacaaataatcttttatatatgtggaacatgcatgcatggcagAAAGGTGCAGGATAGGCACCGGGCATCAGAACGAGTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGAACAAGGACGAACCGCGCCACGAC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G315140_T01 (Zea mays), 3'ss of exon 2
----gtaagacggtcatccctcaagcttctcatttcggaaaaaaa---------aaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattg------------cgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| || | ||| || |||| | || | || | | || || || | | | ||| || | | | ||| || ||| ||||| | |||| | |||| |||| ||||| | ||||||| |||| |||||||||||||||||||| |||||||| |||||||| || || | |||||| | || |||
gcaagaaataaatacattccgaaagcaagtagttgatgcaatggagttggtagtagacaattacatgcatatatacacgtgctgctaattaaatattagactcacaatgatcaattggcatcacacatgcatttggaatgggcagAGAAGTGCAAGATTGGGATGGAGGAGCAGAACGATTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGCACTCGCACCAACCGGGCGACCAC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G092465_T03 (Zea mays), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgc-gttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | || | ||| ||| | | | | | | || | | || || | |||| ||| | | | | |||| ||| || || || | ||| |||| |||||||||||||||||||| |||||||| |||||||| |||||| | |||||| | ||||| |
-------------atcaaacgcgatcgaattcatcgcgcgctaactactggctaacaactgctactactactaaagccgctagctccatt-ccatgcatggaa-------atcgcgcgcagAGAAATGCAAGATCGGGTCGGGTCCCCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGGACGCGCACCAACCGCGCCACGGC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G104074_T01 (Zea mays), 3'ss of exon 2
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
|| | | | | | |||| | | | | | | | || | || || | | | || || ||| | | || ||||| | ||| ||| ||| | | | || ||||||||||||||||||||||||| |||||||| ||||| || || ||||| || ||| | |||||
-------------tttaaaaatatatgaatctaaagccaaaatatc-tcttataatttgaaaagaagtatataggtaactcataggaaggttatatat---ttgtg---gacaatggcagAAAGATGCAAAATAGGCACTGGGCCTCAAAACGAGTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCAACGGGAACGAGAACGAACCGTGCCACGAC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G091490_T01 (Zea mays), 3'ss of exon 1
gtaagacggtcatccctcaagct---tctcatttcggaaaaaa---aaaaccgt--tctttggaagtctttgcgttctaaatgtctctt-ctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAG-CAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
||| | | ||| | | || ||| | || | | | | | | | ||| | | | ||||| |||| | || || || | | | || || ||| || | | | || | | | | | ||| |||| |||||||||||||||||||| |||| ||| |||||||| |||||| | |||||| | ||
gtatg-catccatgcatatagtaggatctgtgtacgagacacatgcatgatcatcgtctatctcattgcttgcgcatgcaatgcatgaaacttacatggcgacgaccggactgacccctgcagACA-AGTGCCGCGTCGGGTCGTCGTCAGGCCCTCAGAACGACTGGTACTTCTTCAGCCACAAGGACAGGAAGTACCCGACGGGGACGCGCACCAACCGCGC------
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G435824_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------------gtaag---acggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctt-tggaagtctttgcgttctaaatgtctcttctctcactg--------ccatcgatgaattgcgtttgcc------acacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | | | || ||| |||| | | | | | | | || | | | || | | | | | | | || || |||| |||||| || ||||| | | | | |||| |||||| || || || ||| |||| ||||||||||||||||||||||||| ||| || |||||||| ||| ||||||| ||| | |||||
gtatatatattatatacttggcaaataaaaaccagttcatgcccccatgcatgcatgcatgtccatggcgatcaatcaatcagtt-actacatgcaggcgcagccatgccggctgcagcttcttcttgttgagtcgttcgtcgctcatccacgtgaatccatcgttgcattgcatgcatcggatatatatgcagAGACGTGCCGGATCGGGTCGGCGCCGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACCGCAAGTACCCGACGGGGTCGAGGACGAACCGCGCCACGAC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G155816_T01 (Zea mays), 3'ss of exon 2
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctt-tggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGC---AGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
|| || || | || || || | ||| ||| | | | ||||||| | | |||| || | || | | | | | |||| |||||| | ||||| | ||||||| || |||||||||| |||||||||||||| |||| ||| ||||| || |||||| | |||||| | || ||
----------------gtaactgactaataacttgaatgcgg---tgtactagtagaaatctaagagctaataatgtctagtgtttcacaat-atgtgttcatggtg---gacgatcgcagATCGGTGCAGGATTGGGACGGCGGAGCCTCAGGACGAGTGGTATTTCTTCAGCCACAAGGACAGGAAGTACCCTACGGGGACGCGAACCAACCGGGCGAC---
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G099144_T01 (Zea mays), 3'ss of exon 1
------------------------------------------------gtaagacggt--catccctcaagcttctcatttcg--gaaaaaaaaaaccgttctttggaagtctttgcgttcta-aatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | | || ||| | ||||| | ||| | | | | | || | ||| | | || | || || | |||| | | |||| ||||||| || || || ||| |||| ||||||||||||||||||||||||| ||| || |||||||| ||| | ||||| ||| | ||||||
gtatagtgcttgggcatgttacgttcatggcttcatccttcatgcatggcgattcagttacatgcacgcagcttgttgtttagttgtttgtcttagcttgttcctgtggcttcctgcacagcacggtaatactcattacatcatgctcatccacttgcatcgatcg-gtgcagAGAGGTGCCGGATCGGGTCGGCGCCGCAGAACGAGTGGTACTTCTTCAGCCACAAGGACCGCAAGTACCCGACGGGGTCCAGGACGAACCGCGCCACCAC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA16G24200.1 (Glycine max), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | ||| | | | | | || || || ||| | | | | | || | | |||| ||| |||| || | ||| | | | ||||| | || ||||||| |||||||||| ||||| |||||||||||||||||||| || || ||||| || |||||||||||||||
------------ttgttaaagaaatatggtcaagctagatctta--attagtttatggtttttatttcttttaaatttggagatgcatggttgtgaatgatttgagttttgcagAGACA------TACAGGATTGGGTACGAGGAGCAGAACGAGTGGTATTTCTTTAGCCACAAAGACAAGAAATATCCAACTGGGACAAGAACCAACAGAGCCACCAT
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA02G05620.1 (Glycine max), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | || | ||| | | ||| | | | | ||| | || || | | | | | | | |||| ||| ||||| || | | | ||| | ||||| | || ||||||| | |||||||| ||||| ||||||||||| |||||||| || || ||||| || |||||||||||||||
-----atcat-attgttaaagaaatatggtctagcaaagctagatctt--------agtttatggttttaatttaattttggagagatggttgtgaatgatttgggtttggcagAGATA------TGCAGGATTGGGTACGAGGAGCAGAATGAGTGGTATTTCTTTAGCCACAAAGATAAGAAATATCCAACTGGGACAAGAACCAACAGAGCCACCAT
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA07G05660.1 (Glycine max), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
|| ||| || | | | | | | | || | | || | | | | | || | | | || | ||| |||| ||| ||| || || | |||| | || ||||||||||||||||||||||||||||| ||||| || || ||| | ||||| | ||||| |
--------------ttggaatattcaaatattgcatcatgagtcatgctgcatgacatgaatcacggcatcattttgaggggtttcttttttctttctatctttctttt------tgcagAGAAATGCAAAATAGGAACCACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACAGGAACGCGCACCAATCGCGCCACTGC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA16G02200.1 (Glycine max), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
|| ||| || | | | | | | || || | |||| | | | | | || ||| |||| ||| ||| || || | |||| | || ||||||||||||||||||||||||||||| ||||| || || ||| | ||||| | || || |
-----------------gaatattcaaatattgcatcatgggtcatgcatgacatgaatcacggcact---aatgcaccattttgaggggtttcttttttcttttctttattttttgcagAGAAATGCAAAATAGGAACCACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACAGGAACGCGCACCAATCGCGCAACTGC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA08G17140.1 (Glycine max), 3'ss of exon 2
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgtt--ctttggaagtctttgcg-ttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | || ||||| | ||| || || | || | | |||| | | | | | | | || | | |||| ||| | ||||| || | | ||| | |||||||| |||||||||||||| |||||||| ||||| || || || || || ||| |||| ||
-----------------------tggaaagaaagacaaaaatatttgttaactatgaaggttataatgcttcttgagtttttgtaacatgaactagttaacatatattggtgcttctttgcagATAAGTGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTATTTCTTCAGCCACAAGGACAAGAAGTACCCAACAGGAACCAGAACAAACCGAGCAACTAC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA15G42050.1 (Glycine max), 3'ss of exon 3
---gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| |||| | ||| | ||| | | ||| | || ||||| || | |||| | || || | ||| | || || || | | ||| | ||||| || | | ||| | |||||||| ||||||||||| || |||||||||||||| || || || || || || |||| ||
atggaaagaaagacat-----agacttgttagccttgaaggttataatacttctt--gagttttttgtagcatgaa----------ctagttaacatatgttgatgcttcttttcagATA------AGTGTAGGATTGGATCAGGGCCTCAGAATGAGTGGTATTTCTTCAGCCATAAGGACAAGAAATACCCAACAGGAACCAGAACAAATCGAGCAACTAC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT5G66300.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| || | | || || ||| | | | | | || | ||| | | | || | | | | || || ||| | || | || || | || |||||| |||||||| ||||||||||| | ||||||||| || ||||| ||||| ||||| ||| |||||||||
-------------------aatttatgaattatgatttaaacgat-accacctacacatgtaagcaactatactgtgtagctcgaaagagtaatatgtaacctaaatgtgatacgtgtagAGAGATGTAGGATAGGGTACGAGGAGCAAACGGAGTGGTATTTCTTCAGCCATAGAGACAAGAAGTATCCGACTGGGACTAGGACAAACCGAGCCACCGT
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT4G10350.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | | | || | | | | | | | || || | ||| || | ||||| | | || ||| | ||| |||| ||| | ||| || || || | || |||| |||||||||||||||||||| |||| |||||| ||||| ||| | ||||||||| | || ||
------------tatatatatatatatatatatatatatagatatatatgcatgaaaagttcattgttatacaattctctaatttgtatgttatctttttattt--tttg------gaagAGAGATGCAAGATAGGATCAACACCACAAAACGAATGGTACTTCTTCAGCCACAAGGACAGGAAATATCCGACGGGGTCAAGGACCAACCGTGCTACTCA
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT1G71930.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttcta-aatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| ||| ||| ||| ||| | || | | || | || | ||||| | | || ||| || ||| |||| || ||| |||| | | || | | ||||| |||||||||||||||| || || || |||| ||| ||||| |||||||| ||||||||| ||||||| |
-----------------atattctcttttttttttaaagaaacataaaatttctaatattttgaccttttgtaatgtaagaaattta--tgacattaat--atttagttttacatttgcagCGAGGTGTAAACTAGGGTATGAAGAGCAAAACGAGTGGTACTTCTTTAGTCATAAGGACAGGAAGTACCCTACCGGGACTAGGACCAACCGAGCCACTGC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT1G32770.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | | | ||||| ||||| | | | || || | | |||| || | | || ||| | | || | |||| || |||| || || || || |||| |||||||||||||||||||| |||||||| || || |||||||| ||||| ||| | || || |
----------------------gttaaaccctaaatatgaaaaaaaactctttca---tttctacgaactctctatttctttgttctttatttttgaaccattttggtatgcaaatgcagAGGAATGTAGAATCGGTTCAACGCCACAAAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTATCCAACCGGGACCAGGACGAACCGGGCAACAGT
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT1G79580.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctc--tcactgccatcgatgaattgcgtt--tgc-cacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| | || | | | | | | ||| || | | || ||| | || || | | || | |||| ||| || | ||| ||| |||| || || | || |||||||||| ||||| |||||||| ||||||||||| ||||| ||||| | || ||| | || || |
------------------------tgtgtgtttaaatatatatatatatatacttaagactataattaacaattgtattttttcaattatatttat-aacaaattttgttgttgtgtgtatgtagAGAAATGCAGAATCGGGTCGGGTCCTCAAAACGAGTGGTATTTCTTTAGCCACAAGGACAAGAAATATCCGACTGGGACCCGAACGAACCGGGCGACAGC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT2G46770.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccac-acacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
||| || | | | | | ||| ||| | | || | || || | | || | | || ||| |||| | | |||| ||| ||| || | || || |||| ||||| ||||| |||||||| ||||| ||||| ||||| || ||||| || ||||||||||| |
----------catattcggagttagttactgc-------aaagaccaacat----aggtttggttattatacaatttactatttaagtttttttcttctgattatttttgtcgttatgcagAGATGTGTAAAATAGGAACAACGCCACAAAACGACTGGTATTTCTTTAGCCACAAGGACAAAAAATATCCGACGGGAACGAGAACTAACAGAGCCACTGC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv04s0023g03110.t01 (Vitis vinifera), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttgga--agtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
||| |||| || | | || || || ||| | |||| | | || | ||| || | || || || | ||||| | ||||| || || | | |||||| | |||||||| |||||||||||||| || |||||||| || || |||||||||||||| ||||| |||
-------------------ggctaacactttcataagctagccatcgcatttctgataagtaaatccgttgtgt---tttccttgttcaaagcgaataattgatctgaattataatggacagAGAGATGCCGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAGGATAAGAAATATCCAACGGGGACGAGGACCAATAGAGCGACCAT
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv15s0048g02660.t01 (Vitis vinifera), 3'ss of exon 1
----------gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
|| | ||||| | |||| | || || || || || | || | ||| ||||| | || || || | || | |||| ||| |||| || ||| | || |||| |||||||||||||||||||| ||||||||||| || || || || ||||| || | ||||| |
gttgtgcttcatatttagttcatcgcctctcattcttttctcttaattttgcaattcttgttgaatattccatcaagatagcgtgtatcttcccct-ttgtgatgttcatatcggcttgggtttttgcagAGAAGTGTAGAATAGGATCCACCCCTCAAAACGATTGGTACTTCTTCAGCCACAAGGACAAGAAATATCCAACGGGAACCAGGACTAATCGCGCCACTGC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv19s0085g01210.t01 (Vitis vinifera), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttcta--aatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| ||| | | || | | |||| || | || || | |||| | | || | | ||| | || ||| ||| || | |||| ||||||||||| || | ||| |||||||||| |||||||||||||| || ||||||||||| || || || | || ||| |||| |||
-----------actaatcag--tccgcaatacccaaaagcaagattaaagtt--gatattattgcagtacggtattgggaaatttttcat----gtttttggatttggttggc---atgcagATAAATGCCGAATTGGATCAGGCTCTCAGAACGAGTGGTATTTCTTCAGCCACAAGGATAAGAAATACCCAACTGGAACTCGAACAAACCGAGCAACCAT
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv18s0072g01060.t01 (Vitis vinifera), 3'ss of exon 1
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
| || | | | | | |||||| ||| | ||| || | | || | | | | | || | | | | | | |||| ||| | ||| ||| | |||| | |||||| | ||||||||||| ||||| |||||||||||||| || ||||| || || |||| || ||||| || |
-----gtactaattagttcaatatacaaat--ggaaaagaaacatcgtagatttaagaa----gaattaatagagcttttgttaacatagatgtggttttggttcatttgtaacagATAGA----TGCAAGCTGGGCTATGATGAGCAGAATGAGTGGTACTTTTTCAGTCACAAAGACAAGAAGTATCCGACGGGAACCCGGACAAATAGAGCTACTGC
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S6_458V6.1 (Physcomitrella patens), 3'ss of exon 1
-------------------------------------------------gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgt---tctaaatgtctcttctctcactgccatcgatg--aattgcgtttgccac-aca-cagAACGGTGCCGAATTGGC---------TCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
|| ||| ||| |||| | |||| | | ||| | | | | | | | | | || ||| | |||| | | | | | || |||| | ||| |||| |||| |||||||| ||| | | ||| ||| |||||||||||||||||||| ||||||||||| || || || | | | ||| |
gtaagccaacgaacccacattttgcaggatttcattaacgttggttgaggttagaaaactggaactc--gctttagttcgaggaatatataaatagatatggatatatatatatatatatatatatgagaatactctaagtactgataacaccatctgtacttgcggcgacatcagAGGTGTGCAGAATTGGCGACGACGCACCCGAGAATCAGAGCGACTGGTACTTCTTCAGCCACAAGGACAAGAAATATCCTACTGGAAACCGCGCAAACCG---------
upper sequence: EFJ32131 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S1_447V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------------------------------gtaagacggtcatccct-caagcttc------tcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttcta-------aat--gtctcttctctcactgc---catcgatgaattgcgtt--tgccacacacagAACGGTGCCGAATTGG------CTCCGCGGAG---CAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
|| | | ||| || ||||| |||||| | | || | | || | || || | | || ||| | || |||| | || || | | | || ||||| |||| | ||||| | | | ||| || |||| |||||||||||||||||||||||||| || ||||| | || | | | ||| |
gtaagaatcgatcagaatcctcggtgtactatgtatgacaccagactagaaaacacgtcctcacatgcttcgttgccccatttcagtctattaagattgaactcatggtgtgttcgagccctgggattgcaattagattccatgtccactacgtacacggacaagtaaccccgatgtggtcatcagAAGTGTGCAGGATTGGGGACGACCCACCAGAGAATCAAAACGACTGGTACTTCTTCAGCCACAAAGACAAAAAGTACCCCTCGGGCAATCGAGCGAACCG--------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
atgaatt TA-rich tract
Putative cis-regulatory sequences
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagacggtcatccctcaagcttctcatttcggaaaaaaaaaaccgttctttggaagtctttgcgttctaaatgtctcttctctcactgccatcgatgaattgcgtttgccacacacagAACGGTGCCGAATTGGCTCCGCGGAGCAGCACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAATACCCGACCGGGACGAGGACCAACAGAGCCACCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
