1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtatagcattcgatctccagctgagcttgattttcctgtgtccgcgcgtagACCACGATCATTGGCGTGGAGTACGCCGACGGTGTTGTTCTTGGAGCTGATTCGCGAACCACAACAG
species | Selaginella moellendorffii |
transcript | EFJ29444 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGACGATTCGAGCTGGATGACTGCCGCGCACAGCATGGGC ACCACGATCATTGGTGTGGAGTACGCCGACGGTGTTGTTCTTGGAGCTGATEST: gi|169035552|gb|FE442943.1|FE442943
genomic: CGACGATTCGAGCTGGATGACTGCCGCGCACAGCATGGGCgtaagtatag ... ccgcgcgtagACCACGATCATTGGCGTGGAGTACGCCGACGGTGTTGTTCTTGGAGCTGAT
EST: TGGCGCTCTCCGACGATTCGAGCTGGATGACTGCCGCGCACAGCATGGGC ACCACGATCATTGGCGTGGAGTACGCCGACGGTGTTGTTCTTGGAGCTGATEST: gi|169112680|gb|FE509453.1|FE509453
genomic: TGGCGCTCTCCGACGATTCGAGCTGGATGACTGCCGCGCACAGCATGGGCgtaagtatag ... ccgcgcgtagACCACGATCATTGGCGTGGAGTACGCCGACGGTGTTGTTCTTGGAGCTGAT
EST: TGGCGCTCTCCGACGATTCGAGCTGGATGACTGCCGCGCACAGCATGGGC ACCACGATCATTGGCGTGGAGTACGCCGACGGTGTTGTTCTTGGAGCTGATEST: gi|169036817|gb|FE444960.1|FE444960
genomic: TGGCGCTCTCCGACGATTCGAGCTGGATGACTGCCGCGCACAGCATGGGCgtaagtatag ... ccgcgcgtagACCACGATCATTGGCGTGGAGTACGCCGACGGTGTTGTTCTTGGAGCTGAT
EST: GACTGCCGCGCACAGCATGGGC ACCACGATCATTGGCGTGGAGTACGCCGACGGTGTTGTTCTTGGAGCTGATEST: gi|169036818|gb|FE444961.1|FE444961
genomic: GACTGCCGCGCACAGCATGGGCgtaagtatag ... ccgcgcgtagACCACGATCATTGGCGTGGAGTACGCCGACGGTGTTGTTCTTGGAGCTGAT
EST: TGGCGCTCTCCGACGATTCGAGCTGGATGACTGCCGCGCACAGCATGGGC ACCACGATCATTGGCGTGGAGTACGCCGACGGTGTTGTTCTTGGAGCTGAT
genomic: TGGCGCTCTCCGACGATTCGAGCTGGATGACTGCCGCGCACAGCATGGGCgtaagtatag ... ccgcgcgtagACCACGATCATTGGCGTGGAGTACGCCGACGGTGTTGTTCTTGGAGCTGAT
gtaagtatagcattcgatctccagctgagcttgattttcctgtgtccgcgcgtagACCACGATCATTGGCGTGGAGTACGCCGACGGTGTTGTTCTTGGAGCTGATTCGCGAACCACAACAG
gcttgat putative branch site (score: 16)
ttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatagcattcgatctccagctgagcttgattttcctgtgtccgcgcgtagACCACGATCATTGGCGTGGAGTACGCCGACGGTGTTGTTCTTGGAGCTGATTCGCGAACCACAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT