1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctttcattcttcgttgagtgattgatttttctgctttctttgcgtgagatttcgtacttctttcgagagtgatctttcatcttttgttataacttccagGCTGGGCCGAGGCTGAGTTTGAGGATTTCAAGCCAGTTCCACACATGTGTCGTCTCGTTCTCGCGGTTTACGAGAAAGACCTCGCGAATCCACGCTGGGC
species | Selaginella moellendorffii |
transcript | EFJ23796 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCACTGGGCTTGGAAGCGCTGCATTCGATCCGGAGAAGACGATAGTCGAG GCTGGGCCGAGGCTGAGTTTGAGGATTTCAAGCCAGTTCCACACATGTGTC
genomic: GCACTGGGCTTGGAAGCGCTGCATTCGATCCGGAGAAGACGATAGTCGAGgtaattcttt ... taacttccagGCTGGGCCGAGGCTGAGTTTGAGGATTTCAAGCCAGTTCCACACATGTGTC
tgagatttcgtacttctttcgagagtgatctttcatcttttgttataacttccagGCTGGGCCGAGGCTGAGTTTGAGGATTTCAAGCCAGTTCCACACATGTGTCGTCTCGTTCTCGCGGTTTACGAGAAAGACCTCGCGAATCCACGCTGGGC
ttataac putative branch site (score: 11)
cttcc CT-rich tract
atcttttgttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttcattcttcgttgagtgattgatttttctgctttctttgcgtgagatttcgtacttctttcgagagtgatctttcatcttttgttataacttccagGCTGGGCCGAGGCTGAGTTTGAGGATTTCAAGCCAGTTCCACACATGTGTCGTCTCGTTCTCGCGGTTTACGAGAAAGACCTCGCGAATCCACGCTGGGC
tctttca
- - - - tcttcgt
- - - - - - - - - gtgattg
- - - - - - - - - - - - - -ttttctg
- - - - - - - - - - - - - - - - - ctttctt
- - - - - - - - - - - - - - - - - - - - - - - - -atttcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acttctt