1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagattcgtggcttttttcgtttctagctcgttcttgtgtgtgatttgcgctgcgtttctagGGTCTTGGCCCATACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAGGAACTCGCGAAAAAAGTGAACGATCTATGCG
species | Selaginella moellendorffii |
transcript | EFJ13722 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAATCCCCCGCCGCTCGACGAGGACGACATCGCGCTGCTCAAGACTTAT GGTCTTGGCCCCTACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAGEST: gi|169037489|gb|FE443357.1|FE443357
genomic: AGAATCCCCCGCCGCTCGACGAGGACGACATCGCGCTACTCAAGACTTATgtaagattcg ... gcgtttctagGGTCTTGGCCCATACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAG
EST: CGCCGCTCGACGAGGACGACATCGCGCTGCTCAAGACTTAT GGTCTTGGCCCCTACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAG
genomic: CGCCGCTCGACGAGGACGACATCGCGCTACTCAAGACTTATgtaagattcg ... gcgtttctagGGTCTTGGCCCATACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAG
gtggcttttttcgtttctagctcgttcttgtgtgtgatttgcgctgcgtttctagGGTCTTGGCCCATACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAGGAACTCGCGAAAAAAGTGAACGATCTATGCG
cgtttct CT-rich tract
tttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattcgtggcttttttcgtttctagctcgttcttgtgtgtgatttgcgctgcgtttctagGGTCTTGGCCCATACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAGGAACTCGCGAAAAAAGTGAACGATCTATGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA