1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttgtgttccatcttaatctctgtttgctctttgatttggctcttggttgtgttcttagctttgctccttcctttgttcttatttttgctccttgggtacttatgtatgctttggcagGACAACGTGTTTGTGTCCCTCGATTGCTCCATCCAGTACCGCGTGGTGCGAGGGAACGCGGACGATGCCTTCTACGAGCTGCAAAATCCCGAGCAACAGA
species | Selaginella moellendorffii |
transcript | EFJ06464 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTCTCTCAAGGTCCAGTACTTGGATGTGCGGTGCGAGACCAAGACCAAG GACAACGTGTTTGTGTCCCTCGATTGCTCCATCCAGTACCGCGTGGTGCGAEST: gi|169050202|gb|FE459126.1|FE459126
genomic: TGTCTCTCAAGGTCCAGTACTTGGATGTGCGGTGCGAGACCAAGACCAAGgtttgtgttc ... gctttggcagGACAACGTGTTTGTGTCCCTCGATTGCTCCATCCAGTACCGCGTGGTGCGA
EST: TGTCTCTCAAGGTCCAGTACTTGGATGTGCGGTGCGAGACCAAGACCAAG GATAACGTGTTTGTGTCCCTCGATTGCTCCATCCAGTACCGCGTGGTGCGAEST: gi|169049842|gb|FE458558.1|FE458558
genomic: TGTCTCTCAAGGTCCAGTACTTGGATGTGCGGTGCGAGACCAAGACCAAGgtttgtgttc ... gctttggcagGACAACGTGTTTGTGTCCCTCGATTGCTCCATCCAGTACCGCGTGGTGCGA
EST: TGTCTCTCAAGGTCCAGTACTTGGATGTGCGGTGCGAGACCAAGACCAAG GACAACGTGTTTGTGTCCCTCGATTGCTCCATCCAGTACCGCGTGGTGCGAEST: gi|169055728|gb|FE465333.1|FE465333
genomic: TGTCTCTCAAGGTCCAGTACTTGGATGTGCGGTGCGAGACCAAGACCAAGgtttgtgttc ... gctttggcagGACAACGTGTTTGTGTCCCTCGATTGCTCCATCCAGTACCGCGTGGTGCGA
EST: TGTCTCTCAAGGTCCAGTACTTGGATGTGCGGTGCGAGACCAAGACCAAG GATAACGTGTTTGTGTCCCTCGATTGCTCCATCCAGTACCGCGTGGTGCGAEST: gi|169029348|gb|FE439450.1|FE439450
genomic: TGTCTCTCAAGGTCCAGTACTTGGATGTGCGGTGCGAGACCAAGACCAAGgtttgtgttc ... gctttggcagGACAACGTGTTTGTGTCCCTCGATTGCTCCATCCAGTACCGCGTGGTGCGA
EST: TGTCTCTCAAGGTCCAGTACTTGGATGTGCGGTGCGAGACCAAGACCAAG GATAACGTGTTTGTGTCCCTCGATTGCTCCATCCAGTACCGCGTGGTGCGA
genomic: TGTCTCTCAAGGTCCAGTACTTGGATGTGCGGTGCGAGACCAAGACCAAGgtttgtgttc ... gctttggcagGACAACGTGTTTGTGTCCCTCGATTGCTCCATCCAGTACCGCGTGGTGCGA
gctccttcctttgttcttatttttgctccttgggtacttatgtatgctttggcagGACAACGTGTTTGTGTCCCTCGATTGCTCCATCCAGTACCGCGTGGTGCGAGGGAACGCGGACGATGCCTTCTACGAGCTGCAAAATCCCGAGCAACAGA
tttgttcttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgttccatcttaatctctgtttgctctttgatttggctcttggttgtgttcttagctttgctccttcctttgttcttatttttgctccttgggtacttatgtatgctttggcagGACAACGTGTTTGTGTCCCTCGATTGCTCCATCCAGTACCGCGTGGTGCGAGGGAACGCGGACGATGCCTTCTACGAGCTGCAAAATCCCGAGCAACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC