1 5' 3' | 2 5' 3' |
...agagaagaaaaccagagaaagaacaagagaatcagatactagaagcctagaaaggatcaatctcaactgtggagcactgatttgattggtggcttggcagGGATCCTTCGTTCTTACGATCCAAGCCCTGGTTCCCAGCCTGAGACCCGACCAATGCGCGGCGAAATCATCGCTGTGCGAGCGCTCGACAGTGGGTCAGC
species | Selaginella moellendorffii |
transcript | EFJ06362 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
cctagaaaggatcaatctcaactgtggagcactgatttgattggtggcttggcagGGATCCTTCGTTCTTACGATCCAAGCCCTGGTTCCCAGCCTGAGACCCGACCAATGCGCGGCGAAATCATCGCTGTGCGAGCGCTCGACAGTGGGTCAGC
atttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagaagaaaaccagagaaagaacaagagaatcagatactagaagcctagaaaggatcaatctcaactgtggagcactgatttgattggtggcttggcagGGATCCTTCGTTCTTACGATCCAAGCCCTGGTTCCCAGCCTGAGACCCGACCAATGCGCGGCGAAATCATCGCTGTGCGAGCGCTCGACAGTGGGTCAGC
- - aagaaaa
- - - - - - - - - aagaaca
- - - - - - - - - - - - - -agaatca
- - - - - - - - - - - - - - - - - - - - agaagcc
- - - - - - - - - - - - - - - - - - - - - - - - agaaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgatt