1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtgatttatgtcaagcgtacgttttgtgtgatctcctcgtgtttcaagGCCCGACGCTGCTGCAAGCGAGGCCGGAAGGCGTGAACAAGCCGGAATTGCTACCGCGAAGCTACACTCCAGTGATTGACGTCGCTGGATTTCTTTCAGA
species | Selaginella moellendorffii |
transcript | EFJ06072 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGTGTGCTATTGCCTGCCGCATTGAGTTTGTCCATCGCCCTCTCTTCTG GCCCGACGCTGCTGCAAGCGAGGCCGGAAGGCGTGAACAAGCCGGAATTGCEST: gi|169030982|gb|FE436846.1|FE436846
genomic: GAGTGTGCTATTGCCTGCCGCATTGAGTTTGTCCATCGCCCTCTCTTCTGgtgagtgatt ... gtgtttcaagGCCCGACGCTGCTGCAAGCGAGGCCGGAAGGCGTGAACAAGCCGGAATTGC
EST: GAGTGTGCTATTGCCTGCCGCATTGAGTTTGTCCATCGCCCTCTCTTCTG GCCCGACGCTGCTGCAAGCGAGGCCGGAAGGCGTGAACAAGCCGGAATTGCEST: gi|70670856|gb|DN839433.1|DN839433
genomic: GAGTGTGCTATTGCCTGCCGCATTGAGTTTGTCCATCGCCCTCTCTTCTGgtgagtgatt ... gtgtttcaagGCCCGACGCTGCTGCAAGCGAGGCCGGAAGGCGTGAACAAGCCGGAATTGC
EST: GAGTGTGCTATTGCCTGCCGCATTGAGTTTGTCCGTCGCCCTCTCTTCTG GCCCGACGCTGCTGCAAGCGAGGCCGGAAGGCGTGAACAAGCCGGAATTGCEST: gi|70669614|gb|DN838191.1|DN838191
genomic: GAGTGTGCTATTGCCTGCCGCATTGAGTTTGTCCATCGCCCTCTCTTCTGgtgagtgatt ... gtgtttcaagGCCCGACGCTGCTGCAAGCGAGGCCGGAAGGCGTGAACAAGCCGGAATTGC
EST: GAGTGTGCTATTGCCTGCCGCATTGAGTTTGTCCGTCGCCCTCTCTTCTG GCCCGACGCTGCTGCAAGCGAGGCCGGAAGGCGTGAACAAGCCGGAATTGC
genomic: GAGTGTGCTATTGCCTGCCGCATTGAGTTTGTCCATCGCCCTCTCTTCTGgtgagtgatt ... gtgtttcaagGCCCGACGCTGCTGCAAGCGAGGCCGGAAGGCGTGAACAAGCCGGAATTGC
gtgagtgatttatgtcaagcgtacgttttgtgtgatctcctcgtgtttcaagGCCCGACGCTGCTGCAAGCGAGGCCGGAAGGCGTGAACAAGCCGGAATTGCTACCGCGAAGCTACACTCCAGTGATTGACGTCGCTGGATTTCTTTCAGA
tctcctcgtgtttc CT-rich tract
tgatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgatttatgtcaagcgtacgttttgtgtgatctcctcgtgtttcaagGCCCGACGCTGCTGCAAGCGAGGCCGGAAGGCGTGAACAAGCCGGAATTGCTACCGCGAAGCTACACTCCAGTGATTGACGTCGCTGGATTTCTTTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA