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gtgagtgttttctttcgcctacccatttattgggaactcatcccacaaatatttactgtgattttcaaaagcaagggcttgatattaatctacttcacgagaagaattctgacataattttttatcctgtatgagacccttatcactgcacaacaaaatgaccatgaataatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAATGTTCATGGGTTTTATGGAGCATCAAGCATGGAGCGTTTGCCAGTTGA
species | Physcomitrella patens |
transcript | PP1S9_334V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|162238883|gb|FC415086.1|FC415086
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|161979171|gb|EE296309.1|EE296309
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: ACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|37844514|gb|BJ602522.1|BJ602522
genomic: ACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|37842335|gb|BJ600343.1|BJ600343
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|162246377|gb|FC421070.1|FC421070
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|37838990|gb|BJ596998.1|BJ596998
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|37845029|gb|BJ603037.1|BJ603037
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|162175714|gb|FC351301.1|FC351301
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|37834878|gb|BJ592890.1|BJ592890
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|162226926|gb|FC403114.1|FC403114
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|162246378|gb|FC421071.1|FC421071
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|18334199|gb|BJ166215.1|BJ166215
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|37839750|gb|BJ597758.1|BJ597758
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|37850404|gb|BJ608412.1|BJ608412
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAEST: gi|162184283|gb|FC360511.1|FC360511
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
EST: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTG GGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
genomic: CGACGCAGCTTATGAAGTCAATCCAGAGATCATTGTACTCTGCCATGGTGgtgagtgttt ... aatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGA
tcctgtatgagacccttatcactgcacaacaaaatgaccatgaataatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAATGTTCATGGGTTTTATGGAGCATCAAGCATGGAGCGTTTGCCAGTTGA
atgaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgttttctttcgcctacccatttattgggaactcatcccacaaatatttactgtgattttcaaaagcaagggcttgatattaatctacttcacgagaagaattctgacataattttttatcctgtatgagacccttatcactgcacaacaaaatgaccatgaataatgttgcagGGCCTATATCTGGACCAAAGGAAGCAGAGTATGTATTGCAAAGAACAAAGAATGTTCATGGGTTTTATGGAGCATCAAGCATGGAGCGTTTGCCAGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA