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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggagaaccaagtatcgtcaactttttcatttgtcattgttttctcgctagggttgtggctatttcgttaacattcgttaaaattctatctaaaatacagGTCATGCCAAAACAACCAGGGTTTGAGCAACGGACAGAGCTGTACAAATTATACCACTACCTCAACCATTATAATCTTTTCGGATCAGGATACCGTGGCT

Basic information

species Physcomitrella patens
transcript PP1S83_158V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208396828|gb|DC920424.1|DC920424
EST:     TGTCATGGTGCGCAGGGTTTGGCCCCTCTTTNTATGACGCTTACTTCAAG                         GTCATGCCAAAACAACCAGGGTTTGAGCAACGGACAGAGCTGTACAAATTA
genomic: TGTCATGGTGCGCAGGGTTTGGCCCCTCTTTCTATGACGCTTACTTCAAGgtacaaagtt ... taaaatacagGTCATGCCAAAACAACCAGGGTTTGAGCAACGGACAGAGCTGTACAAATTA
EST: gi|18333323|gb|BJ165337.1|BJ165337
EST:     TGTCATGGTGCGCAGGGTTTGGCCCCTCTTTCTATGACGCTTACTTCAAG                         GTCATGCCAAAACAACCAGGGTTTGAGCAACGGACAGAGCTGTACAAATTA
genomic: TGTCATGGTGCGCAGGGTTTGGCCCCTCTTTCTATGACGCTTACTTCAAGgtacaaagtt ... taaaatacagGTCATGCCAAAACAACCAGGGTTTGAGCAACGGACAGAGCTGTACAAATTA
EST: gi|162187661|gb|FC364105.1|FC364105
EST:     TGTCATGGTGCGCAGGGTTTGGCCCCTCTTTCTATGACGCTTACTTCAAG                         GTCATGCCAAAACAACCAGGGTTTGAGCAACGGACAGAGCTGTACAAATTA
genomic: TGTCATGGTGCGCAGGGTTTGGCCCCTCTTTCTATGACGCTTACTTCAAGgtacaaagtt ... taaaatacagGTCATGCCAAAACAACCAGGGTTTGAGCAACGGACAGAGCTGTACAAATTA
EST: gi|37838919|gb|BJ596927.1|BJ596927
EST:     TGTCATGGTGCGCAGGGTTTGGCCCCTCTTTCTATGACGCTTACTTCAAG                         GTCATGCCAAAACAACCAGGGTTTGAGCAACGGACAGAGCTGTACAAATTA
genomic: TGTCATGGTGCGCAGGGTTTGGCCCCTCTTTCTATGACGCTTACTTCAAGgtacaaagtt ... taaaatacagGTCATGCCAAAACAACCAGGGTTTGAGCAACGGACAGAGCTGTACAAATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctagggttgtggctatttcgttaacattcgttaaaattctatctaaaatacagGTCATGCCAAAACAACCAGGGTTTGAGCAACGGACAGAGCTGTACAAATTATACCACTACCTCAACCATTATAATCTTTTCGGATCAGGATACCGTGGCT
                                          atctaaa  putative branch site (score: 3)
                                      ttctatct  CT-rich tract
                                ttaaaattctatctaa  TA-rich tract