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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagcatcattgtttgcttggtactttcctgcctggttcagtgtaagtagtgccatgtgtaatacttggctgtacatttaaagtttgtgttataaatgcagTGCCAATCATCTACAAGGTAGAGAGGACGCGCAATGGTCACACTTTTGCAACCAGACAGGTTTCTGCAATACAAAAAGGCAGAGTAATCTTTACAATGTA

Basic information

species Physcomitrella patens
transcript PP1S79_266V6.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162173739|gb|FC349915.1|FC349915
EST:     ACTAGTCCACAGCCTTCATGCGTACTTTCTCCTTACTGGAGATGAACGGA                         TGCCAATCATCTACAAGGTAGAGAGGACGCGCAATGGTCACACTTTTGCAA
genomic: ACTAGTCCACAGCCTTCATGCGTACTTTCTCCTTACTGGAGATGAACGGAgtacgattca ... ataaatgcagTGCCAATCATCTACAAGGTAGAGAGGACGCGCAATGGTCACACTTTTGCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagtgccatgtgtaatacttggctgtacatttaaagtttgtgttataaatgcagTGCCAATCATCTACAAGGTAGAGAGGACGCGCAATGGTCACACTTTTGCAACCAGACAGGTTTCTGCAATACAAAAAGGCAGAGTAATCTTTACAATGTA
                             atttaaagtttgtgtt  TA-rich tract