1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagatattttatggacttattggctatcgaggaaaacctcttgatttttgagtttagacatttttatacgtggggacaatcgtgtctgtatgtctaatacgtaaaattattgttctactgtcgcaactccattgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGATCACCACTACCGAAAGGCGTTCTCGGTTTCTGCAAGCTTTAGCCCCAAC
species | Physcomitrella patens |
transcript | PP1S79_254V6.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37841176|gb|BJ599184.1|BJ599184
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|162269549|gb|FC445105.1|FC445105
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37836542|gb|BJ594550.1|BJ594550
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|208354680|gb|DC918706.1|DC918706
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|208347734|gb|DC925607.1|DC925607
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37849158|gb|BJ607166.1|BJ607166
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|208366175|gb|DC955276.1|DC955276
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|162238634|gb|FC418997.1|FC418997
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37833353|gb|BJ591365.1|BJ591365
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37845130|gb|BJ603138.1|BJ603138
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37850186|gb|BJ608194.1|BJ608194
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37844185|gb|BJ602193.1|BJ602193
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|7648262|gb|AW739245.1|AW739245
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: CTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAACCTACAATG ATANACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37843376|gb|BJ601384.1|BJ601384
genomic: CTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|208381754|gb|DC928417.1|DC928417
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTNGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37835860|gb|BJ593872.1|BJ593872
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37843420|gb|BJ601428.1|BJ601428
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|162192771|gb|FC369622.1|FC369622
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|67699119|gb|BJ959352.1|BJ959352
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37842304|gb|BJ600312.1|BJ600312
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37824362|gb|BJ582428.1|BJ582428
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|18340062|gb|BJ172090.1|BJ172090
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|208380520|gb|DC915422.1|DC915422
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|162276878|gb|FC452560.1|FC452560
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: TCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|208348822|gb|DC925894.1|DC925894
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|162191817|gb|FC367966.1|FC367966
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|208382347|gb|DC919335.1|DC919335
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37822622|gb|BJ580688.1|BJ580688
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|162164830|gb|FC341345.1|FC341345
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37834032|gb|BJ592044.1|BJ592044
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|162162092|gb|FC338883.1|FC338883
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|162195496|gb|FC369353.1|FC369353
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGAEST: gi|37831038|gb|BJ589050.1|BJ589050
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
EST: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATG ATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
genomic: GCTTCATGCTATGAACCAAGCTTTACAGTTTTTGCAGGAAAACTACAATGgtaagatatt ... attgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGA
ctgtatgtctaatacgtaaaattattgttctactgtcgcaactccattgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGATCACCACTACCGAAAGGCGTTCTCGGTTTCTGCAAGCTTTAGCCCCAAC
gtctaat putative branch site (score: 3)
ctccatt putative PPT
taatacgtaaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatattttatggacttattggctatcgaggaaaacctcttgatttttgagtttagacatttttatacgtggggacaatcgtgtctgtatgtctaatacgtaaaattattgttctactgtcgcaactccattgtcgcagATAAACTTGTGGGAGTTTTCACCTTTACGAAGAGCGCCAATAATTTTGAGATCACCACTACCGAAAGGCGTTCTCGGTTTCTGCAAGCTTTAGCCCCAAC
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